Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3237 ATGGGTAACATAGGAAGCAGCAGTTCTAACAACAACCGTCGTAGACACAGTGGCAGTGGCAGAAGGACTCATCCGCCGCCGCCTCCACCGGTTACGCCACAGCCTGAAATCACGGCCAATCGATTCGTATTCCCAAACCCGAATCCTCCACCGTATTACCAGTACCCCGGTTATTATCCCCAACAGCCACCAGCTATGCCGGTGCCTCTGCCTGGTCCATACGATCAACAGCATCGTATGGGGTCTCAGCAACCCATGGACCCAGCATGGATTGGCGGACGTTACCCTTGTGGCCCTGTTATGCCTGCACCCACACCCTATGTGGAGCATCAGAAGGCGGTTACGATAAGGAACGATGTTAATATCAAGAAGGAGACTCTAAGGATCGAGCCGGATGAGGAAAATCCTGGGCGGTTTCTTGTGGCATTCACATATGATGCCACTGTTGCTGGGAGTATCACCATACTTTTTTTTGCAAAAGAAGGTGATGGCTGCATCCTTACACCAACAAAGGAAAATCTTCTAGCACCTGTAACTGTACACTTCCAGCATGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTATTGACTTTTCAGTATTTGAGGAGTCAGAATTATTGAAAGTGGGTGACATGGATGTCTACCCTCTGGCAGTGAAGGCAGATGCATCCCCTGGTAATCTTGATGGATCAAATGAAACTCCTACATCTGGATCTGGTAGCACAAACTCTCAGATAACTCAAGCAGTgtttgagaaagagaaaggagagtTCCGGGTGAAGGTTGTTAAACAGATATTGTGGGTGAATGGAAATAGGTATGAGCTGCAGGAGATATATGGCATTGGAAAAGAGTGTGTCATCTGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCTTGCCGACACATGTGCATGTGCAGCGGATGTGCTAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCGGTTGAGAGACTTTTGGAGATAAAGGTCAACAACGGAGCCGAAGAATAA 1035 0.4754 MGNIGSSSSNNNRRRHSGSGRRTHPPPPPPVTPQPEITANRFVFPNPNPPPYYQYPGYYPQQPPAMPVPLPGPYDQQHRMGSQQPMDPAWIGGRYPCGPVMPAPTPYVEHQKAVTIRNDVNIKKETLRIEPDEENPGRFLVAFTYDATVAGSITILFFAKEGDGCILTPTKENLLAPVTVHFQHGLGQKFRQPAGTGIDFSVFEESELLKVGDMDVYPLAVKADASPGNLDGSNETPTSGSGSTNSQITQAVFEKEKGEFRVKVVKQILWVNGNRYELQEIYGIGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNNGAEE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3237 344 PANTHER MAHOGUNIN 1 343 IPR045194 GO:0061630
Sto13g3237 344 SMART ring_2 288 326 IPR001841 -
Sto13g3237 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 337 IPR013083 -
Sto13g3237 344 MobiDBLite consensus disorder prediction 229 246 - -
Sto13g3237 344 Pfam Zinc finger, C3HC4 type (RING finger) 286 332 - -
Sto13g3237 344 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 287 327 IPR045195 -
Sto13g3237 344 ProSiteProfiles Zinc finger RING-type profile. 288 327 IPR001841 -
Sto13g3237 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 343 - -
Sto13g3237 344 SUPERFAMILY RING/U-box 287 333 - -
Sto13g3237 344 MobiDBLite consensus disorder prediction 227 246 - -
Sto13g3237 344 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3237 Sto-Chr13 36241046 36244148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3237 93 307 C3H Transcription Factor Family AT3G09770 64.103 1.93e-102 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3237 - - aprc:113862864 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3237 13 36241046 36244148 Sto13g3237 13 36241046 36244148 ECH