Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3236 ATGAAGATTCCTcgctttttttcaatttgttgcTCACCATCGGTCAAATACCAAAGCAAGCCtgcagATGCGTCGGGGACAGACAAGGACGCAAACACGACGTTTCGTTTGTTCACATACAGAGAACTGAAATCAGCCACTCGGGGATTTCACTCCTCGGACAAGATCGGAGAAGGGGGTTTTGGCTCTGTCTACAAGGGGCGGCTTCGGGATGGCACATTTGTTGCCGTCAAAGTGCTTTCCATAGAGGTGGATTCCATGCAAGGAGAGAAAGAGTTTGTGGCAGAATTGGCCACGCTCGCAGATGTCAAACACCCAAATCTAGTCATTCTCCGAGGTTGTTGTGTCGAAGGAGCTCACAGATATTTAGTGTACCAGTATATGGAGAACAATAGCCTTCACCACTTCTTCTtagGTTCGAAGGAGGGGAGGATGAGATTCAGGGGGTATCTTGCTCCTGAGTATGCCAGTTCGGGACAGGTCACACGAAAATCCGATGTTTATAGCTTTGGAGTATTACTCTTGGAAATTGTAAGCGGCCTAGCAGTGGTAGATACTCGTCAAGACAGAGAACGTTTCCTGGTTGAGAAGGCTTGGGGGGCGTATGAAGGTGATGATCTTATAAGAATGGTGGATGGTGAGCTAAATGGGGAGTTTCCAGAAGAGGAAGCCATACGATTCCTTAAGGTGGGGTTGCTGTGCGTGCAAGAAGATGCGAAGCTTAGGCCTAAAATGACAGAAGCACTGGAAATGTTGAGTGAGGAGGGTGAAAATGAAATAGAAGGGATTCGTATTTCCAGACCAGGGCTTGTTTCTGATCTGAGGGACATTAGAATTAAAGATTCCTCACAAGGATCAACTTCAAGTGGAGCAGCAACCTATGCACCTTCCATCTGGAGTTCCACAAATCTAGCCCGTtag 921 0.4582 MKIPRFFSICCSPSVKYQSKPADASGTDKDANTTFRLFTYRELKSATRGFHSSDKIGEGGFGSVYKGRLRDGTFVAVKVLSIEVDSMQGEKEFVAELATLADVKHPNLVILRGCCVEGAHRYLVYQYMENNSLHHFFLGSKEGRMRFRGYLAPEYASSGQVTRKSDVYSFGVLLLEIVSGLAVVDTRQDRERFLVEKAWGAYEGDDLIRMVDGELNGEFPEEEAIRFLKVGLLCVQEDAKLRPKMTEALEMLSEEGENEIEGIRISRPGLVSDLRDIRIKDSSQGSTSSGAATYAPSIWSSTNLAR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3236 306 Gene3D Transferase(Phosphotransferase) domain 1 127 266 - -
Sto13g3236 306 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 147 - -
Sto13g3236 306 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 148 292 - -
Sto13g3236 306 Pfam Protein tyrosine and serine/threonine kinase 149 251 IPR001245 GO:0004672|GO:0006468
Sto13g3236 306 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524
Sto13g3236 306 SMART serkin_6 50 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3236 306 Gene3D Phosphorylase Kinase; domain 1 14 126 - -
Sto13g3236 306 SUPERFAMILY Protein kinase-like (PK-like) 28 252 IPR011009 -
Sto13g3236 306 ProSiteProfiles Protein kinase domain profile. 50 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3236 306 Pfam Protein kinase domain 50 137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3236 306 PANTHER SERINE/THREONINE-PROTEIN KINASE ISOFORM X1-RELATED 2 147 - -
Sto13g3236 306 PANTHER SERINE/THREONINE-PROTEIN KINASE ISOFORM X1-RELATED 148 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3236 Sto-Chr13 36233575 36235135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3236 149 261 Receptor kinase-like Gene Family AT1G53420 35.965 9.79e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sto13g3236 PK_Tyr_Ser-Thr 2.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3236 - - gmx:100785251 193.356