Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3228 ATGCCACCGAAATTTGATCCTACCCAGGTGGTGGACGTCTTCGTCCGAGTCACAGGTGGTGAGGTCGGTGCTGCGAGTTCCCTCGCTCCGAAGATCGGTCCTCTTGGTCTTTCTCCAAAGAAGATCGGTGAAGACATAGCCAAAGAGACCGCAAAAGATTGGAAGGGTCTCCGAGTCACCGTCAAGCTCACCGTGCAGAATCGGCAAGCGAAAGTGTCCGTGGTGCCGTCGGCCGCTGCGTTGGTGATCAAGGCCTTGAAGGAGCCGGAAAGAGACCGAAAGAAAACCAAGAACATTAAGCACAATGGTAACATCTCACTTGACGACGTGATCGAGATCGCCAAAGTCATGCGGCCTAGATCCATGGCCAAGGATTTGAGTGGAACAGTTAAGGAGATTCTCGGAACTTGCGTATCTGTTGGGTGTACTGTTGATGGGAAGGACCCCAAGGATCTGCAGCAGGAGATAACTGATGGAGACGTTGAAATCCCTCAAGATTGA 501 0.521 MPPKFDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3228 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Sto13g3228 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 IPR000911 GO:0003735|GO:0005840|GO:0006412
Sto13g3228 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 - -
Sto13g3228 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Sto13g3228 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Sto13g3228 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Sto13g3228 166 Gene3D - 82 164 IPR036769 -
Sto13g3228 166 MobiDBLite consensus disorder prediction 147 166 - -
Sto13g3228 166 Gene3D - 1 81 IPR036796 -
Sto13g3228 166 Pfam Ribosomal protein L11, N-terminal domain 15 69 IPR020784 -
Sto13g3228 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Sto13g3228 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Sto13g3228 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3228 Sto-Chr13 36213293 36213793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3228 1 166 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 88.554 8.89e-108 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3228 K02870 - sind:105161385 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3228 13 36213293 36213793 Sto13g3228 13 36213293 36213793 ECH
Sto13g3228 13 36213293 36213793 Sto12g0296 12 1776588 1777088 ECH
Sto13g3228 13 36213293 36213793 Sto7g0946 7 7454897 7455397 ECH