Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3225 ATGATGGACGAAAAGTGCTTGAGTCCTGAGCTATGGTATGCGTGTGCCGGCGAGATGGTCCAAATTCCGCCCCTCACTTCCCAGGTCTTTTACTTCCCTCAGGGTCACGCTGAACACGCATGTGGCCCCGTCCGCTTCACCTCTCTTCTTCCCCCTTATGTTCTCTGCACACTCACTTCCCTCAAATACATGGCTGATCCTCACACCGACGAGCTCTTCGCTAAACTCTCCCTCCTCCCTCTCAATCTCAACCACCACCATGATGATGCTGAATTACCCCTCATCCACTCCAAACCTCCACATAAGCTCCCCTCCTTCGCCAAAACCTTGACGCAATCTGATGCTAACAATGGCGGCGGCTTCTCTGTTCCTAGATATTGTGCCGAGAAAATGTTTCCTCCTCTCGATTTTTCCAAGGATCCTCCTCTTCAATATATAACGGCTAAAGATGTCCACGGCGAATCCTGGAGATTCAAGCACATTTACAGAGGCACCCCCAGGCGGCATCTTTTGACCACTGGTTGGAGTCCTTTTGTCAACAACAAGAAGCTCGTCGCTGGGGATTCTGTAGTCTTTCTAAAAGCTAACAACAATGATCTCTATGTGGGGATTCGACGAGCCAAAAGAGGAAATGGGGTTCGATTTCATTCTTCGCTAACTTCTAATTCTCTGCCTTATGGAGGAGCAGGATTATCGGGCTTCTTGAGGGAGGACGATAGGAAAAGGAAACTGGTGAGCATTAATAACGAGGATAATATTGGAGTAATGAACTCTAGTGCAAGTGTGATGGGTGAAGCAGTTATTGAAGCTGCAAATCTTGCAGCCCAGGGACGAGCCTTTGATGTTACATACTACCCTCGTGCAAGTACTCCAGAGTTCTGTGTGAAGGCGTCCTTGGTGAAAAACGCAATGCACATTAAGTGGTATTCTGGATTGAGGTTCAAGATGGCCCTCCAAACACAGGATTCCTCCCGGATAACTTGGTTCATCGGAACTATATCTTCAGTTGAAGTTGCCGATCCTCTGCTTTGGCCTTCTTCCCCTTGGAGGATTCTCCAGGTGAAATGGGATGAAGCAGATTTGCTTGAAAATGTGAAACGGGTGAGTCCATGGTCGGTTGAATTGCTAACAGACATGCCTGCAATCCCTCCACCTTTGTCACCTTCACCCAAGAAACTAAGGTTGCTTCAACATCCACATTTTCCCCCACTTGATCCCCAACTTTATTTACCAACAATGTTTTCTACCCACCACCTCATACCTCCTCCCAATAACCCCTATGCCTATCATCATCCTCCTGCTGGCATGCAGGGAGCCAGGCAAGCTTTTTGTGCTCTATCCTTACTCAATCCCAACCCCGCAGGTCACCTTCTCACACCTGCTTTACGACCGCCAATTCATCATTCTACAGCTATACAGACAAGGCTGTCTAAAAATACTCCCACACTCCAAAATCCTAGTACGAGTGAGAATGTTTCTTGCTTGCTATCCAAGCAAAATTCTACTCATTCTCGGAATAATCCGCCGGATGATGTAAAGACACCACCCCACCTTGTGCTTTTTGGCAAAGTCATTCGTACCCACAATCACAGCTCTTGTGACGCAGTCTCTCCAGTCAATTTGGAGACGGATCACTGTAAGGTTTTTTTGGATACAGAAGATTTAGGTCGGACTATGAACCTGTCGTTGCTTGGGTCTTACGACGAGTTGTACCGGAAACTCACAGAAATGTTTGGCATTTTAATATCTGATGCGAAGATGCTGAACCGTGTGATTTACCAAGATATAAAGGGGGAGATCAAACGAGTTAGAGATGAACCATTCAGGtag 1830 0.4699 MMDEKCLSPELWYACAGEMVQIPPLTSQVFYFPQGHAEHACGPVRFTSLLPPYVLCTLTSLKYMADPHTDELFAKLSLLPLNLNHHHDDAELPLIHSKPPHKLPSFAKTLTQSDANNGGGFSVPRYCAEKMFPPLDFSKDPPLQYITAKDVHGESWRFKHIYRGTPRRHLLTTGWSPFVNNKKLVAGDSVVFLKANNNDLYVGIRRAKRGNGVRFHSSLTSNSLPYGGAGLSGFLREDDRKRKLVSINNEDNIGVMNSSASVMGEAVIEAANLAAQGRAFDVTYYPRASTPEFCVKASLVKNAMHIKWYSGLRFKMALQTQDSSRITWFIGTISSVEVADPLLWPSSPWRILQVKWDEADLLENVKRVSPWSVELLTDMPAIPPPLSPSPKKLRLLQHPHFPPLDPQLYLPTMFSTHHLIPPPNNPYAYHHPPAGMQGARQAFCALSLLNPNPAGHLLTPALRPPIHHSTAIQTRLSKNTPTLQNPSTSENVSCLLSKQNSTHSRNNPPDDVKTPPHLVLFGKVIRTHNHSSCDAVSPVNLETDHCKVFLDTEDLGRTMNLSLLGSYDELYRKLTEMFGILISDAKMLNRVIYQDIKGEIKRVRDEPFR 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3225 609 SMART B3_2 106 208 IPR003340 GO:0003677
Sto13g3225 609 SUPERFAMILY DNA-binding pseudobarrel domain 101 208 IPR015300 -
Sto13g3225 609 Gene3D - 104 208 IPR015300 -
Sto13g3225 609 ProSiteProfiles PB1 domain profile. 543 609 IPR000270 GO:0005515
Sto13g3225 609 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 608 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto13g3225 609 MobiDBLite consensus disorder prediction 477 515 - -
Sto13g3225 609 Pfam B3 DNA binding domain 106 207 IPR003340 GO:0003677
Sto13g3225 609 Gene3D - 540 609 - -
Sto13g3225 609 Gene3D - 307 380 - -
Sto13g3225 609 PANTHER AUXIN RESPONSE FACTOR 4 608 - -
Sto13g3225 609 ProSiteProfiles B3 DNA-binding domain profile. 106 208 IPR003340 GO:0003677
Sto13g3225 609 Pfam Auxin response factor 270 353 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto13g3225 609 MobiDBLite consensus disorder prediction 477 509 - -
Sto13g3225 609 CDD B3_DNA 104 206 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3225 Sto-Chr13 36199068 36200984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3225 4 608 B3 DNA Binding Superfamily AT4G30080 47.626 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto13g3225 B3 9.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3225 - - cit:102611587 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3225 13 36199068 36200984 Sto8g2418 8 16495380 16497740 ECH
Sto13g3225 13 36199068 36200984 Sto13g3225 13 36199068 36200984 ECH
Sto13g3225 13 36199068 36200984 Sto12g0306 12 1847055 1849565 ECH
Sto13g3225 13 36199068 36200984 Sto7g0935 7 7346471 7348950 ECH