Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3222 ATGTCTTCCTCTGCTGCTTCCTTAGCTCTTCCTACTCTCACTTCCACATCCCAGACTCTCTGCTCGGCCAGGCAAGCCTTCTTCTCTCCCCATTCCATTTCTTCGGTTTCTCTTAGGCTTAAGTCCAACCCTATCTCAATAACTGCCTCCTTTCTTCAATTCCacactccttctctctctttctcgtcTCGTTTCCTTCCCAATGTTGCCCTTTCTTCTCAGTTCGACCAAGACGAGATTTTGAGTGAAGGAGACGAGCCCAGTTACTCCCCCGACCTCAAGCTTTTTGTGGGCAATCTTCCTTTCAGTGTTGACAGTGCCCAACTGGCTCAGCTTTTCGAGGGCGCTGGAAATGTGGAGATGGTTGAGGTCATTTATGATAAAATGACTGGTAGAAGCAGGGGGTTTGGTTTTGTTACCATGTCTAACACTGACGAAGTTGAAGCAGCCGCTCGCTTATTCAATGGCTATGAACTAGATGGAAGGCAATTGAGAGTAAATTTTGGTCCTCCTCCTCCAAAGAGGGAGAATGCCCCTTTTAGAACTCCCAGAGGTGGCTCTGGCTCAGCTTCAGATTCTGGATACCGTGTTCATGTAGGCAATCTCGCATGGGGTGTTGATAACTTGGCGCTTGAGACATTGTTTGGTGAGCAAGGAAAGGTTTTGGAAGCAAAAGTAATTTATGACAGGGAAAGTGGAAGGTCAAGAGGATTTGGATTTGTCACTTACAGTAGTGCTGAGGAGGTCAACAGTGCTATTGAATCATTGGATGGTGTGGATTTGAATGGCAGATCTATTCGAGTGTCATTAGCAGATGCTAAGCCTCCAAGGCGTCAATTTTGA 843 0.452 MSSSAASLALPTLTSTSQTLCSARQAFFSPHSISSVSLRLKSNPISITASFLQFHTPSLSFSSRFLPNVALSSQFDQDEILSEGDEPSYSPDLKLFVGNLPFSVDSAQLAQLFEGAGNVEMVEVIYDKMTGRSRGFGFVTMSNTDEVEAAARLFNGYELDGRQLRVNFGPPPPKRENAPFRTPRGGSGSASDSGYRVHVGNLAWGVDNLALETLFGEQGKVLEAKVIYDRESGRSRGFGFVTYSSAEEVNSAIESLDGVDLNGRSIRVSLADAKPPRRQF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3222 280 MobiDBLite consensus disorder prediction 167 192 - -
Sto13g3222 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 273 IPR000504 GO:0003723
Sto13g3222 280 Gene3D - 73 191 IPR012677 -
Sto13g3222 280 Gene3D - 192 280 IPR012677 -
Sto13g3222 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 171 IPR000504 GO:0003723
Sto13g3222 280 SUPERFAMILY RNA-binding domain, RBD 87 195 IPR035979 GO:0003676
Sto13g3222 280 SUPERFAMILY RNA-binding domain, RBD 191 279 IPR035979 GO:0003676
Sto13g3222 280 CDD RRM_HP0827_like 94 171 - -
Sto13g3222 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 267 IPR000504 GO:0003723
Sto13g3222 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 165 IPR000504 GO:0003723
Sto13g3222 280 SMART rrm1_1 94 167 IPR000504 GO:0003723
Sto13g3222 280 SMART rrm1_1 196 269 IPR000504 GO:0003723
Sto13g3222 280 PANTHER OS02G0815200 PROTEIN 1 277 - -
Sto13g3222 280 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3222 Sto-Chr13 36176282 36178449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3222 5 280 Eukaryotic Initiation Factors Gene Family AT3G16380 27.536 5.40e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3222 - - jre:109008641 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3222 13 36176282 36178449 Sto13g3222 13 36176282 36178449 ECH