Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3220 ATGGCCGTCAGATTCCTTGCATCATCCTACGGCTTTCGTTACTTTGCCACCAACCCCCCCTTGTGCTCCTCCCGCCTTGCTACCTCTCTCTCATGCCCACCTACCAAACCCACAAACCCCAGCCCCCCTAACAAGAATAAAACCGCCGAGTCACTCAAGGGCAGCCACTTGGATGAGGTGAAGCGCATGGTGGCCGAGTACCGGAAGCCCGTGGTCCGCATCGGCGGGGAGACCCTCACCATCGCTCAGGTGGCGGCCGTCTCCGCCCACGACCAAGGTGTCCAGGTGGAGCTGTCGGAGTCGGCCAGAGCTGGCGTTAAAGCCAGCAGCGACTGGGTCATGGATAGCATGAACAAGGGCACCGATAGCTACGGTGTCACCACTGGCTTCGGTGCTACCTCCCACAGGCGAACCAAACAAGGTGCTGCTTTGCAGAAAGAGCTTATTAGATTCTTGAACGCTGGTATCTTTGGAAACGGCACCGAATCATGCCACACCCTGCCCCACTCAGCAACCAGAGCAGCGATGCTAGTGAGAATCAACACTCTCCTCCAAGGATACTCTGGCATCCGATTCGAAATATTAGAAGCCATCGCCAACCTCCTCAACCACAACATCACTCCATGCTTGCCACTTCGTGGAACAATCACTGCCTCCGGCGATCTCGTCCCACTCTCCTACATTGCCGGCCTCCTCACCGGCCGCCCCAACTCCAAAGCCGTCGGACCCTCCGGACAAATCCTCACTCCCAAGCAAGCCTTCCAATTGGCCGGCATCCATTCTGACTTCTTCGAATTGCAGCCTAAGGAAGGTCTCGCCCTCGTAAACGGCACCGCCGTTGGCTCTGGTTTGGCTTCCATGGTTCTTTTCGAGGCTAACATACTAGCCGTCTTGGCTGAAGTTCTCTCCGCAGTTTTTGCTGAAGTGATGCAAGGCAAGCCTGAATTTACAGACCATTTGACGCATAAGTTGAAGCACCACCCTGGCCAAATTGAAGCTGCGGCTATTATGGAACACATTTTGGACGGAAGCTCTTACATGAAAGCAGCTAAGAAGTTGCACGAGATTGACCCCTTGCAGAAGCCTAAACAAGACCGTTACGCCCTTCGAACTTCACCCCAATGGCTTGGTCCTCTCATTGAAGTCATCCGATTCTCCACCAAATCCATTGAGAGGGAGATCAACTCTGTAAACGACAACCCTCTGATTGACGTTTCAAGGAACAAGGCCTTGCACGGTGGTAATTTCCAAGGAACCCCAATTGGAGTCTCCATGGACAACACGCGTTTAGCTCTCGCCTCCATCGGCAAACTCATGTTCGCTCAATTCTCGGAACTGGTGAATGACTTTTACAACAATGGCTTGCCCTCGAATCTCTCTGGTAGCCGAAACCCCAGCTTGGACTACGGCTTCAAGGGGGCTGAAATCGCCATGGCATCTTACTGCTCTGAGCTTCAATATCTGGCAAACCCCGTCACAAGCCATGTTCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCCTTGGGTCTCATCTCATCTAGAAAGACAAACGAATCTATTGAGATACTAAAGCTCATGTCTTCCACATTCTTGATTGCGCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAGAGCACAGTGAAGAGCACGGTGAGTCAAGTTGGCAAGAGAACCCTCACCACAGGCGTCAACGGAGAACTCCATCCTTCCAGATTCTGCGAGAAAGATCTGCTCAAGGTGGTTGACAGAGAGCACGTGTTTGCCTACATCGACGACCCCACCAGCGCTACATACCCATTGATGCAAAAACTAAGGCAAGTGTTGGTGGATCACGCATTAGCCAATGGCGACAAGGAGAGGGAGTTGAGCACATCAATCTTCCAGAAGATTGCAACTTTTGAGGAGGAGTTAAAGGCTCTGTTGCCGAAGGAGGTGGAAGGTGCGAGACTAGCATACGAGAATGGGAACTCAGTGATTCCAAACCAAATCAAGGAATGCAGGTCGTACCCGTTGTACAAGTTCGTGAGAGAGGAATTGGGAACTGGATTGCTTACTGGAGAAAAGACGAGGTCACCCGGTGAAGAGTGTGACAAGGTGTTCGCGGCTTTGTGTCAGGGTAAGATTATTGATCCACTTCTAGAATGCCTTGGAGAGTGGAACGGTGCACCTCTTCCAATCTGTTAG 2199 0.5184 MAVRFLASSYGFRYFATNPPLCSSRLATSLSCPPTKPTNPSPPNKNKTAESLKGSHLDEVKRMVAEYRKPVVRIGGETLTIAQVAAVSAHDQGVQVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGQILTPKQAFQLAGIHSDFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLAEVLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSGSRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLIALCQAIDLRHLEENLKSTVKSTVSQVGKRTLTTGVNGELHPSRFCEKDLLKVVDREHVFAYIDDPTSATYPLMQKLRQVLVDHALANGDKERELSTSIFQKIATFEEELKALLPKEVEGARLAYENGNSVIPNQIKECRSYPLYKFVREELGTGLLTGEKTRSPGEECDKVFAALCQGKIIDPLLECLGEWNGAPLPIC 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3220 732 Gene3D Fumarase/aspartase (Central domain) 279 727 - -
Sto13g3220 732 MobiDBLite consensus disorder prediction 30 52 - -
Sto13g3220 732 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 39 732 - -
Sto13g3220 732 SUPERFAMILY L-aspartase-like 41 732 IPR008948 GO:0003824
Sto13g3220 732 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 214 230 IPR022313 GO:0016841
Sto13g3220 732 PANTHER HISTIDINE AMMONIA-LYASE 39 732 IPR001106 -
Sto13g3220 732 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 43 721 IPR005922 GO:0005737|GO:0006559|GO:0016841
Sto13g3220 732 CDD PAL-HAL 77 542 IPR001106 -
Sto13g3220 732 Gene3D - 35 278 IPR024083 -
Sto13g3220 732 Gene3D - 545 666 IPR023144 -
Sto13g3220 732 Pfam Aromatic amino acid lyase 79 550 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3220 Sto-Chr13 36150431 36153356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3220 42 732 Monolignol Biosynthesis Gene Families AT2G37040 83.647 0.0 1226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3220 K10775 - gmx:100811101 1241.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3220 13 36150431 36153356 Sto8g2425 8 16582051 16586026 ECH
Sto13g3220 13 36150431 36153356 Sto13g3220 13 36150431 36153356 ECH