Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3191 ATGGGTAGAGCTCCTTGCTGTGACAAGGCAAATGTAAAGAAAGGACCATGGTCTCCTGAAGAAGATGCCAAGCTAAAGGAGTATATACAGAAACATGGGACTGGAGGGAACTGGATTGCTCTCCCACATAAAGCtgGCTTGAAAAGATGTGGGAAAAGCTGTAGACTGAGATGGCTTAACTATCTGAGACCCAACATTAAGCATGGGGAGTTCTCTGATGAAGAAGATAGAATCATCTTTAGCCTCTTTTGTAGCATTGGAAGCAGGTGGTCAGTAATAGCAGCTCAATTACCAGGAAGGACAGACAATGATATCAAGAACCACTGGAACACCAAGCTCAAGAAGAAAATGATGGCTATGCACAATCCTTCAGTTCAGGAGGATCAGAAGCCTCATCAAGCTACCCTTTTGACCGTTCTTCAAAacaccacatcatcatcttcttcttcaccatTATCATTCACAGACAGCACCATTAACTCttactaccaccaccaccaccaccacaaccCTCTTGTGTCTTTCACaggctcttcttcttcttcaagtcTTGTGAGTGGGAATTCCTCAACTTCTGCTAACTCCAACATTTTAGACAGCAGTTTCATCATGGGACCCACTCAGAATCAGCAAGTGTTGGGAAATATGGTTGGGGGTGAGGCTGCTAGTTGCAGCTCTTCTGTTGGGAGCTGCAATAATAAGCAGATGTGTCATGTGAAAGCAGAGTTGAAGAATGTGTATGGTGGAGGTTTGCATAATTATCACAGAGGTGGATTGTGGGGAGAGAACCTATTAGATTATGGTATAGAAGAAATTAAGCAGCTTATAAGCAGTGATAGTGGTAGCAACTTTTTGTTTGATGAAAACTAG 870 0.3862 MGRAPCCDKANVKKGPWSPEEDAKLKEYIQKHGTGGNWIALPHKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIIFSLFCSIGSRWSVIAAQLPGRTDNDIKNHWNTKLKKKMMAMHNPSVQEDQKPHQATLLTVLQNTTSSSSSSPLSFTDSTINSYYHHHHHHNPLVSFTGSSSSSSLVSGNSSTSANSNILDSSFIMGPTQNQQVLGNMVGGEAASCSSSVGSCNNKQMCHVKAELKNVYGGGLHNYHRGGLWGENLLDYGIEEIKQLISSDSGSNFLFDEN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3191 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Sto13g3191 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Sto13g3191 289 PANTHER TRANSCRIPTION FACTOR RAX3 1 283 - -
Sto13g3191 289 Gene3D - 69 137 - -
Sto13g3191 289 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Sto13g3191 289 PANTHER OS09G0431300 PROTEIN 1 283 - -
Sto13g3191 289 Gene3D - 7 68 - -
Sto13g3191 289 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Sto13g3191 289 CDD SANT 16 62 IPR001005 -
Sto13g3191 289 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Sto13g3191 289 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Sto13g3191 289 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Sto13g3191 289 SMART sant 67 115 IPR001005 -
Sto13g3191 289 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3191 Sto-Chr13 35957583 35958700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3191 1 175 MYB Transcription Factor Family AT5G57620 64.045 3.90e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto13g3191 Myb_DNA-binding 5.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3191 K09422 - pop:18100146 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0935 8 5878379 5879433 Sto13g3191 13 35957583 35958700 CCT
Sto13g3191 13 35957583 35958700 Sto13g3191 13 35957583 35958700 ECH