Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3172 ATGGATCGTGAATGGGGTTCAAAGCCTGGAAGCGGAGGCGCCGCCTCCGCCCAGAACGAAGCCATCGACCGTCGCGAGCGTCTCCGCCGACTTGCCCTTGAGACTATTGATCTTGCCAAAGACCCCTACTTCATGCGCAATCATCTTGGCAGCTATGAGTGCAAGCTTTGTCTCACTTTACACAACAATGAAGGGAATTACTTGGCGCACACACAGGGTAAGCGCCATCAGACTAATTTGGCTAAGAGAGCAGCGCGTGAGGCCAAAGACGCACCCGCTCAACCTCAGCCCCACAAGCGTAAAGTCTCCGTTCGCAAGTCAGTGAAGATTGGCAGGCCTGGGTACCGAGTGACTAAGCAATATGATCCAGAGACAAAGCAGAGATCTCTTCTTTTTCAGATTGAATATCCTGAGATTGAAGACCTAACAAAGCCAAGGCATCGATTTATGTCTTCATATGAGCAGAGAGTGCAACCCTTTGATAAAAGATATCAGTATCTTTTGTGTGCAGCTGAACCCTATGAAATCATCGCTTTCAAGGTTCCCAGCACTGAGATTGATAAGTCAACTCCAAAGTTTTTCTCACACTGGGATCCAGACTCGAAGATGTTCACGTTGCAATTGTACTTCAAATCCAAGCCACCAGAGGCAAACAAACCCCAGCCTCCCGCTACTGCCAATGGCACAGCTGCACCTGGTGTTCCACCAAGGCCTTTGCCTCCACCACCCCAAGCTCCTCCTCCGCCTCCTCCTCCACCACAAGGGTTGCCTCCTGGTGCACCTCTCGGAAATCCTCCTAGAGCCCCTCCTCCTCCAATGCCTGGATCACTGCCGCCTCCACCCCCAATGGCAAATGGCCCTCGACCTGTACCTCCTGGTGGAATTTCTTCTATCCCACCCCCAGCCCCGGTTGCCAACAGCACAACAGCAAGTTTCAACATGGGTTCTAGACCTCTATCAATGCCACCTGGGCAAGGTTTTCCAGGACAACAAATGCAAGGTCATCCTCCGCCACCACCTCCTCCTAGAATGGGGCAGTAG 1041 0.5226 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVSVRKSVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKRYQYLLCAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEANKPQPPATANGTAAPGVPPRPLPPPPQAPPPPPPPPQGLPPGAPLGNPPRAPPPPMPGSLPPPPPMANGPRPVPPGGISSIPPPAPVANSTTASFNMGSRPLSMPPGQGFPGQQMQGHPPPPPPPRMGQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3172 346 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 339 - -
Sto13g3172 346 Pfam Zinc-finger of C2H2 type 52 76 - -
Sto13g3172 346 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Sto13g3172 346 Gene3D Classic Zinc Finger 46 89 - -
Sto13g3172 346 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Sto13g3172 346 Gene3D - 93 218 - -
Sto13g3172 346 MobiDBLite consensus disorder prediction 86 106 - -
Sto13g3172 346 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Sto13g3172 346 MobiDBLite consensus disorder prediction 301 318 - -
Sto13g3172 346 MobiDBLite consensus disorder prediction 213 346 - -
Sto13g3172 346 MobiDBLite consensus disorder prediction 332 346 - -
Sto13g3172 346 MobiDBLite consensus disorder prediction 1 21 - -
Sto13g3172 346 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Sto13g3172 346 MobiDBLite consensus disorder prediction 233 299 - -
Sto13g3172 346 SMART CactinC_cactus_3 89 217 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3172 1 228 C2H2 Transcription Factor Family AT2G32600 89.035 1.33e-142 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3172 K12826 - gmx:100791333 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3172 13 35862938 35866051 Sto13g3172 13 35862938 35866051 ECH