Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3160 ATGGGTAAATTCGATTTAGGTGCTGATTATCGCGCTCCGTTCGAAGAGGCCATGAAGTCAGACTTGGAATTAACGGCTGTTTTGGAGGACCAGTCTCATGATCAATGCGATGCATTCGTTCCCGCTCCGGCTTCGGAAGCTCAAGCTGGGTCTGAGACACTGACGATGCTTAGTGTGCAGGTTTCTGAGAATAGCCATTCTAAGGTAGTTAGAGGTTCTGTAGTTAATGGTTATGTTGTTTATACTCGAAGAAAGAAGTCTCGGCGTTTGTGTGATGGTTCTTCTGAGAATGCGAAGGTTAAGAGACTCAAGACCTCTGAAGAACTGCAAGCAAATGGTCACCTTCCGGTGGCAGATGGTGGAGGCAGTGCGGAGGTAgacaaaatagaacaaaaaaaggaaattggAAGCGGTTGCTGTATGGAAAAGGACATAAGCTGTAAGGAGCTAAAGAGCGAGACTGCACTTGCTGTGGAAGCTGGCTTCCATGAGGTTCCTGTAGTGATGATTTCTAACAATGGTGATGTACAAAGAGATGCCGCTAATAAGATATTAAAGCGGTACACTCGATCAGCATTGAAAACAAAGGCTAAGTCCTTTGATAAGACGGGAGGTGTGTCAGAAGCTGCTCAGAATGCAAATAGTGATGGTAAAGTGAACGCTGCTGCCAGCGCATTAACAACTCCAAAAAACAACTTGGAATTGAAGATGTCGAAAAAGATTGTGCTAAACAAGAAGCCTATGACCGTCAAGGAGCTCTTCGATACTGGTATATTGGATGGGGTTTCAGTAGTTTACATGGGCGGCAAGAAGGCTTCGGGACTGCGAGGCATTATTAAGGATGGGGGAATATTATGCTCCTGCTCTCTGTGCAATGGACGCAGGGTCATTCCTCCTTCCCAATTCGAGATTCATGCATGTAAATCGTATAGGCGAGCAGCCCAATACATTTGCCTGGAAAATGGGAAGAGCCTACTTGAGCTATTGAGAGCATGCAGGGGAGCTCCCTTACATACACTGGAGGCGACAATTCAAAATGTTGTTTGTTCTCCAcctgaagaaaaatattttacttgtaAAATGTGCAAGGTACTTTTCCCTCTTCCTTGTGTGGAAAGAGTAGGGTCTATATGCAATTCTTGCAAGGAATCCAAGGAATCCGAAGACAGTTCTATTAATGCTGTTGTCAAAAGAGTCAGGTCCCCTAGACTGGTATCTGGCTCCAAGCTATCCAGTGTGTCTGAGCAGTGTATCTCTTCACAGATCAAGCGACATCGGAAGAAAAGAACAAAGCATCAGCAGTTGCATAAGTTAGTTTTTGAGGAAGGTGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGAGGACAGAAACTGCTTGAGGGTTACAAAAAGGGCTTTGGAATACTTTGTCTATGCTGCAACTCTGAGGTCAGCCCCTCACAGTTTGAGGTTCATGCAGGCTGGGCTTCCCGCAAGAAACCTTATGCATACATCTACACATCAAATGGGGTGTCTCTCCATGAGTTAGCTATATCTCTCTCAAAAGGTCGCAAATACTCTGCAAAGGACAACGATGATCTATGCATCGTTTGTTGGGATGGAGGAGATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAGAGAATGCGCATCTCTGTCAAGTATTCCGCGTGGTGACTGGTATTGTAAGTTCTGCCAAAACATGTTCCAAAGAGAAAAGTTTGTGGCACACAATGTCAATGCAGTGGCAGCTGGGAGAGTTGAAGGAGTTGATCCTATTGAACAGATAACCAAGAGATGCATACGCATTGTTGAAGACATTGAAGCTGAGCTTAATGGATGTGCTTTATGCAGAGCTTGTGACTTCAGCAAATCAGGATTTGGTCCGCGAACAATAATAATCTGTGATCAGTGTGACAAGGAATATCATGTTGGCTGCTTGAGGGATCATAAAATGTCATATTTGAAGGAATTGCCAAAAGGGGATTGGTTTTGTTGCCAGGGTTGCTCAATAATACACTCAACTTTGCTGAACCTCCTGGCTAGGGGGGCTGAGGAGCTCCCACAACATCTCTTGGATGTTATAACGAAGAAGCAAGAGGAAAAAGGTTTGGAATCCCTCAGTGATATTGATGTGAGATGGAGGCTTCTTAAGGGAAACACTGCTTCTCCTGAAACTAGACCATTTCTTTTGCAGGCTGTCACAATCTTTCATGAATGCTTTAGTCCTATAGTTGATTCAATTAGTGGACGCAACCTTATTACGGCCATGGTTTATGGACGGAAAGTGCGGAATCAAGAGTTTGGAAGAATGCGTTGTGCAATATTACTGGTCAATTCAATTGTGGTATCGGCTGCCATGCTTCGAATTTTTGACGAAGTTGTTGCAGAACTTCCTCTAGTTGCAACTAGTAGTGGTAACCGTGGAAAGGGCTACTGCCAAATACTATTCTCTTGCATTGAGAAACTGCTGGTTTCTTTGAACGTGAAGAATCTTGTGCTACCAGCTGCTGAAGAAGCAGAGTCCTTATGGACAGAGAAATTTGGGTTCAAAAGGATGAAACCAGACGAGCTTAGCAACTATAGACGGAACTACCATCCTATTGTGGTTTTCCAAGGGACTACCATGCTTCATAAAATGATCACTCCATATCCAAAAGCTCTTAACTTTAGCATGAGATTCAATAGAACCCTCTTTTGTGTCTCTGCCTTTCTcacttctctttccctttccattATAATTGTTCTTTATGGCACACCTCCTATCTTCACCACCACTATCTCTGACACTGATCCTCAGAAGAATTTCAACCAGCTTGGTCTTTTAAGTAGGATTATTAAGCTTATCGGCGTTGAAGACTTTGTATCTCTAGTACTAACAAGTTTTGGAAGGAAGCAAGATCATGATCCCCAGAGGGAGCACAATGAGAAATGTGACAATACCAAATGGGATTCCAGGCTCATTCTGGAGTACAATGTGAGTCTTGTTTTGACGGTTGATTTAAAGGGTTGTGCCAATTTTAGTAGTGTGCAAAAAGCAGTGGATGCTGTTCCTGAATCTAGCCCTGATCATAGGACCCTCATCATAGTTGATTCTGGCACATACAGGGAGAAGGTAGTGGTGGAGGAAAACAAGACGAACTTAATAATCCAAGGTAAAGGGTATCTCAACACAGTCATAGAATGGAATGACACAGCAAATTCTACAGGAGGAACGGTTAAGAGCTACTCGGCGGCAATCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAATACAGCTCCGGCGCCATCGCCGGGTGTGTCCGGAGCACAGGCAGTGGCACTGAGAGTGAGTGGTGATGAAGCAGCATTCTATGGATGTGGAATGTATGGTGCACAGGACACACTCAATGATGACAGTGGGAGGCATTATTTTAAAGAATGTTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCTAGATCGCTTTATGAGGATTGCAGCTTAAACTCTATAGcaaaagaagagggagatgaaATAAGCGGGTCCATCACAGCCCATGGGAGGGAATGGGAGAAGGAGGAAACAGGGTTTTCATTTGTGAATTGTAGGATTGGTGGAAGTGGGAAAGTTTGGCTGGGAAGAGCTTGGGGACCTTATGCCACTGTCGTCTTCTTAACAACAACTATGTCCGATGTTGTAGCTCCCCAAGGATGGAACGACTGGTCTAATTCCACCAGAGACACGAGCGTCTTTTTTGGGGAATACCACTGTTCTGGAGTTGGAGCTACCTACTCTTCTAGAGTCTCGTATGGGAGGCAACTCACAGACGATGAAGCAGCCCCCTTCATGGATGTTTCCTTCATTAATGGAAACGATTGGCTTCTCAATcaccaatattaa 3906 0.4314 MGKFDLGADYRAPFEEAMKSDLELTAVLEDQSHDQCDAFVPAPASEAQAGSETLTMLSVQVSENSHSKVVRGSVVNGYVVYTRRKKSRRLCDGSSENAKVKRLKTSEELQANGHLPVADGGGSAEVDKIEQKKEIGSGCCMEKDISCKELKSETALAVEAGFHEVPVVMISNNGDVQRDAANKILKRYTRSALKTKAKSFDKTGGVSEAAQNANSDGKVNAAASALTTPKNNLELKMSKKIVLNKKPMTVKELFDTGILDGVSVVYMGGKKASGLRGIIKDGGILCSCSLCNGRRVIPPSQFEIHACKSYRRAAQYICLENGKSLLELLRACRGAPLHTLEATIQNVVCSPPEEKYFTCKMCKVLFPLPCVERVGSICNSCKESKESEDSSINAVVKRVRSPRLVSGSKLSSVSEQCISSQIKRHRKKRTKHQQLHKLVFEEGGLPDGTEVAYYARGQKLLEGYKKGFGILCLCCNSEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIVCWDGGDLLLCDGCPRAFHRECASLSSIPRGDWYCKFCQNMFQREKFVAHNVNAVAAGRVEGVDPIEQITKRCIRIVEDIEAELNGCALCRACDFSKSGFGPRTIIICDQCDKEYHVGCLRDHKMSYLKELPKGDWFCCQGCSIIHSTLLNLLARGAEELPQHLLDVITKKQEEKGLESLSDIDVRWRLLKGNTASPETRPFLLQAVTIFHECFSPIVDSISGRNLITAMVYGRKVRNQEFGRMRCAILLVNSIVVSAAMLRIFDEVVAELPLVATSSGNRGKGYCQILFSCIEKLLVSLNVKNLVLPAAEEAESLWTEKFGFKRMKPDELSNYRRNYHPIVVFQGTTMLHKMITPYPKALNFSMRFNRTLFCVSAFLTSLSLSIIIVLYGTPPIFTTTISDTDPQKNFNQLGLLSRIIKLIGVEDFVSLVLTSFGRKQDHDPQREHNEKCDNTKWDSRLILEYNVSLVLTVDLKGCANFSSVQKAVDAVPESSPDHRTLIIVDSGTYREKVVVEENKTNLIIQGKGYLNTVIEWNDTANSTGGTVKSYSAAIFASKFTAYNISFKNTAPAPSPGVSGAQAVALRVSGDEAAFYGCGMYGAQDTLNDDSGRHYFKECFIQGSIDFIFGNARSLYEDCSLNSIAKEEGDEISGSITAHGREWEKEETGFSFVNCRIGGSGKVWLGRAWGPYATVVFLTTTMSDVVAPQGWNDWSNSTRDTSVFFGEYHCSGVGATYSSRVSYGRQLTDDEAAPFMDVSFINGNDWLLNHQY 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3160 1301 Pfam Pectinesterase 1002 1293 IPR000070 GO:0030599|GO:0042545
Sto13g3160 1301 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 724 885 IPR000182 GO:0016407
Sto13g3160 1301 SMART PHD_3 620 674 IPR001965 -
Sto13g3160 1301 SMART PHD_3 529 570 IPR001965 -
Sto13g3160 1301 CDD PHD1_AIRE 529 569 - -
Sto13g3160 1301 SUPERFAMILY FYVE/PHD zinc finger 611 670 IPR011011 -
Sto13g3160 1301 Gene3D - 716 886 - -
Sto13g3160 1301 PANTHER AUTOIMMUNE REGULATOR 57 394 - -
Sto13g3160 1301 PANTHER AUTOIMMUNE REGULATOR 403 886 - -
Sto13g3160 1301 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 773 859 IPR016181 -
Sto13g3160 1301 Pfam PHD-finger 530 571 IPR019787 -
Sto13g3160 1301 ProSiteProfiles Zinc finger PHD-type profile. 527 572 IPR019787 -
Sto13g3160 1301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 675 IPR013083 -
Sto13g3160 1301 Gene3D - 995 1301 IPR012334 -
Sto13g3160 1301 ProSiteProfiles Zinc finger PHD-type profile. 618 676 IPR019787 -
Sto13g3160 1301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 516 603 IPR013083 -
Sto13g3160 1301 Pfam Tify domain binding domain 277 332 IPR032308 -
Sto13g3160 1301 Pfam Tify domain binding domain 463 513 IPR032308 -
Sto13g3160 1301 ProSitePatterns Zinc finger PHD-type signature. 530 569 IPR019786 -
Sto13g3160 1301 ProSitePatterns Pectinesterase signature 2. 1150 1159 IPR033131 -
Sto13g3160 1301 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 403 886 - -
Sto13g3160 1301 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 57 394 - -
Sto13g3160 1301 SUPERFAMILY FYVE/PHD zinc finger 518 575 IPR011011 -
Sto13g3160 1301 SUPERFAMILY Pectin lyase-like 998 1296 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3160 Sto-Chr13 35779818 35790125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3160 68 885 PHD Transcription Factor Family AT2G36720 45.011 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto13g3160 Pectinesterase 6.5e-68 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3160 - - gmx:100802562 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0975 8 6130895 6137224 Sto13g3160 13 35779818 35790125 CCT