Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3150 ATGGCGGAATCAGCCTCTGGATTAGCCATCGACGAGAACAAGAAGACTACTAAGTTCTTGGACGAGCCCGAGGACTCCAACATCAAGCGCCAGCACATTGAAGATTTGAGTCTCTCCCCGGAGTTGCTAAAAGGATTGTATGTTGAGATGAAATTCCAGAAGCCTAGCAAAATCCAAGCTATCAGTCTGCCAATGATTTTGAATCCTCCTTTTAAGGATTTGATCGCACAGGCTCATAATGGTTCAGGCAAGACAACGTGTTTTGTGCTTGGGATGCTGAGTCGTATTGATCCTAAGCTGCAGGCTCCTCAAGCTCTTTGCATTTGTCCAACAAGAGAATTGGCTATTCAGATTGAGAATAATGGTGGTTACTACCTACTAAAATTTGCCAGAATACGGAAGTTCTTCGCAAGATGGGAAAATACACTGGAATTATTTCAGAATGTGCCGTACCAGCAGACAGCAGAGATTCTATTCCAATATCAAGCGAGCGCCTATTATGGCACAAGTAGTAATTGGGACCCGGGTACTATAAAGAGGTGGATGTCATATAAGAAACTGAGTGTAGTCAGATTAAAAATTCTTGTGTTTGATGAGGCTGATCAATGCTTGCTGAGGAATAATTTCTCGGGAGATGGTTTTAGAGATGATTCTTTGAGGATAATGAAAGATATAGAAAGAGTCAATTCTAGCTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACATTGTAAAGAATTTTGTTTCAAGGACAGTTAAGAAGGATCATAATCAActttttgtgaaaaagaagaacTATCTCTAG 807 0.3965 MAESASGLAIDENKKTTKFLDEPEDSNIKRQHIEDLSLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPFKDLIAQAHNGSGKTTCFVLGMLSRIDPKLQAPQALCICPTRELAIQIENNGGYYLLKFARIRKFFARWENTLELFQNVPYQQTAEILFQYQASAYYGTSSNWDPGTIKRWMSYKKLSVVRLKILVFDEADQCLLRNNFSGDGFRDDSLRIMKDIERVNSSCQVLLFSATFNDIVKNFVSRTVKKDHNQLFVKKKNYL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3150 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 254 IPR027417 -
Sto13g3150 268 Pfam DEAD/DEAH box helicase 57 247 IPR011545 GO:0003676|GO:0005524
Sto13g3150 268 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 256 - -
Sto13g3150 268 Gene3D - 9 266 IPR027417 -
Sto13g3150 268 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 31 60 IPR014014 GO:0003724
Sto13g3150 268 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 65 259 IPR014001 -
Sto13g3150 268 SMART ultradead3 51 265 IPR014001 -
Sto13g3150 268 PANTHER DEAD-BOX HELICASE DBP80 22 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3150 Sto-Chr13 35720385 35722665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3150 36 254 Eukaryotic Initiation Factors Gene Family AT1G72730 30.870 2.88e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3150 K18655 - pvy:116131273 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3150 13 35720385 35722665 Sto13g3150 13 35720385 35722665 ECH