Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3145 ATGGCGGTTTCTCCGACGGTCGCCGCTGCACCGGCGTCGCTCTACGTCGGCGACCTCCACCCTGACATCGCCGATGGCCAGCTGCTCGATGCATTTGCAGAGTTCAAGAGTCTCGCGTCTGTTCGGATCTGTAGGGACTCCTCTACCGGCCGGTCACTCTGTTACGGCTACGTCAACTTCATCTCTCCCCAAGatgCTATTCGTGCTATTGAGGTGAAGAATCATTCTACACTGAATGGAAGAGTGATAAGGGTCATGTGGGCACATCGTGATCCTGATGCAAGGAAAAGTGGTATAGCGAACGTGTTTGTTAAGATAATTTGGGATTACACGAgctgtttcaaaaatttgggAAAATTTTGTCCAGCAAAGTTGTCATGTCTGAGGGGGAGTAGCAAAGGATACGGCTTTGTTCAATTTGAATCAGAGGAATCTGCAAATGCTGCCATTGAAAAGCTGAATGGCTCCACTATTAGAGATAAACAGATATACGTCGGGAAGTTTATCAAGAAAAATGACCGCATTTTGCCTGGCCCTGATTCCAAATTTACAAATttgttcatgaaaaatttgGACCCAGAGACAACAGAAGAGCTTCTGCAGGAAAAATTCTCTTCTTTTGGCAAAATTGTTAGTTTGGCTATTGCTAAGGACGACAATGGACTATCGAAGGGTTTCGGCTTTGTGAACTATGATAATCCAGATGATGCTAAACGGGCAATGGAATCCATGAATGGATCACAACTTGGTTCAAAGATTATATATGTAGCCAGGGCTCAAAAGAAGGCTGAGCGTGAGCAAATATTGCATCATCAGTTTGCGGAGAAACGTAAGGAACAAATCTTGAAATATAAGGGATCAAACATTTATGTGAAGAACATTGATGATGATGTCAGTGACGAAGAACTAAGAGATCATTTTAGTTTATGTGGTACAATAACATCTGCGAAAATTATGCGAGATGACAAAGGGATCAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCACCCCTGAGGAGGCCAATAAAGCTGTGAACAGTTTCCATGCTGCACTTTCTGACACTGCCCTGTCTCCGTTAGGGTTAAGTTTGCAATGTGTGATGGCTACTGGTATTGTTTCTCAGGTGCCTTCTCGACCTGGATTACTATATCAACCATTGGGATTGAGGCCCGGATGGAGGCCTAATGGCTTTGCGTCTCCACCGACTATACCATTTCAACAGTCGCCAGTTTCTGCTCCTGGTATTTCTACGAGGCAGCTTAGACAAAATAGGAGCAGGATGAATGGGCAAGCAATTCCACAGGGAAATGTTCACTTGGGTACATATATACCACAAGCACATCAGCCTTCTTATTCAACGGTCTCTTCTAAAGAATCAACTACTCAGCAGGTTTGCTTTGTTGCTAAGATCCGTAGTTATAGATGCATGTGCACTACGCGCGTTCTACCCTGCGGACTGGGCAGACTAAGTATGTGCCCAGCGGGCGCCAACATGAGATGGAAAAAGGATCTGGAGTCTCATCTGCTGCTGCTGGGGGGTCATGGATCAGAAATGCTCCATAGCATGCTTACTGCTGCTACTCCTGAGCAGCAAAAACAAATACTTGGCGAGCATCTTTACCCACTTGTCCATAAACTCAAGCCTAGCCTAGCAGCGAAGATTACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAATCTCCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTACAGGTGCTTAAGAACTCCAAGACCAAAGTGTCAGGCCAGGATGTACTTCATTCAAGTTACCTTTCTGCTGAGGTTGCAGTGAACTGA 1839 0.4481 MAVSPTVAAAPASLYVGDLHPDIADGQLLDAFAEFKSLASVRICRDSSTGRSLCYGYVNFISPQDAIRAIEVKNHSTLNGRVIRVMWAHRDPDARKSGIANVFVKIIWDYTSCFKNLGKFCPAKLSCLRGSSKGYGFVQFESEESANAAIEKLNGSTIRDKQIYVGKFIKKNDRILPGPDSKFTNLFMKNLDPETTEELLQEKFSSFGKIVSLAIAKDDNGLSKGFGFVNYDNPDDAKRAMESMNGSQLGSKIIYVARAQKKAEREQILHHQFAEKRKEQILKYKGSNIYVKNIDDDVSDEELRDHFSLCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHAALSDTALSPLGLSLQCVMATGIVSQVPSRPGLLYQPLGLRPGWRPNGFASPPTIPFQQSPVSAPGISTRQLRQNRSRMNGQAIPQGNVHLGTYIPQAHQPSYSTVSSKESTTQQVCFVAKIRSYRCMCTTRVLPCGLGRLSMCPAGANMRWKKDLESHLLLLGGHGSEMLHSMLTAATPEQQKQILGEHLYPLVHKLKPSLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSSYLSAEVAVN 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3145 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 347 IPR000504 GO:0003723
Sto13g3145 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 254 IPR000504 GO:0003723
Sto13g3145 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 163 IPR000504 GO:0003723
Sto13g3145 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Sto13g3145 612 SMART poly_2 527 590 IPR002004 GO:0003723
Sto13g3145 612 Gene3D - 99 169 IPR012677 -
Sto13g3145 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 261 IPR000504 GO:0003723
Sto13g3145 612 PANTHER POLYADENYLATE-BINDING PROTEIN 506 597 - -
Sto13g3145 612 PANTHER POLYADENYLATE-BINDING PROTEIN 368 466 - -
Sto13g3145 612 PANTHER POLYADENYLATE-BINDING PROTEIN 5 349 - -
Sto13g3145 612 SUPERFAMILY RNA-binding domain, RBD 119 265 IPR035979 GO:0003676
Sto13g3145 612 CDD RRM3_I_PABPs 183 262 - -
Sto13g3145 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 370 IPR000504 GO:0003723
Sto13g3145 612 SMART rrm1_1 13 86 IPR000504 GO:0003723
Sto13g3145 612 SMART rrm1_1 101 166 IPR000504 GO:0003723
Sto13g3145 612 SMART rrm1_1 185 257 IPR000504 GO:0003723
Sto13g3145 612 SMART rrm1_1 288 359 IPR000504 GO:0003723
Sto13g3145 612 Gene3D - 514 607 - -
Sto13g3145 612 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 515 592 IPR002004 GO:0003723
Sto13g3145 612 Gene3D - 170 269 IPR012677 -
Sto13g3145 612 Gene3D - 3 98 IPR012677 -
Sto13g3145 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Sto13g3145 612 SUPERFAMILY PABC (PABP) domain 515 599 IPR036053 GO:0003723
Sto13g3145 612 SUPERFAMILY RNA-binding domain, RBD 13 172 IPR035979 GO:0003676
Sto13g3145 612 Pfam Poly-adenylate binding protein, unique domain 523 587 IPR002004 GO:0003723
Sto13g3145 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 170 IPR000504 GO:0003723
Sto13g3145 612 SUPERFAMILY RNA-binding domain, RBD 283 348 IPR035979 GO:0003676
Sto13g3145 612 CDD RRM1_I_PABPs 13 92 - -
Sto13g3145 612 PANTHER RNA BINDING PROTEIN 5 349 - -
Sto13g3145 612 PANTHER RNA BINDING PROTEIN 506 597 - -
Sto13g3145 612 PANTHER RNA BINDING PROTEIN 368 466 - -
Sto13g3145 612 Gene3D - 270 354 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3145 Sto-Chr13 35700237 35705095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3145 12 610 Eukaryotic Initiation Factors Gene Family AT2G36660 45.696 3.48e-173 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3145 K13126 - gmx:100779547 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0988 8 6212454 6216844 Sto13g3145 13 35700237 35705095 CCT
Sto13g3145 13 35700237 35705095 Sto13g3145 13 35700237 35705095 ECH