Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3142 ATGATCATTGAACCAACCATAACCCCACGTTTCCATGGTAGCTatgtctttcttcttttcctttcccttttccttATTCATCACTCTACTTCTCAAAAGACTTGCCCAAACTGTGGCTCCATACAAATCCCATATCCTCTGAGCACAGACTCTAGCTGCGGTGATCCATCCTATAGCATTCATTGTGATCCCAAATCTAAAAGGCTTTTCTTCGTCTCCCTCAATGGAAGTTCCTATCCCATTCTCCGAATCATGCCTTCGATCCAGCGCTTGGTGGTGCAGCCATTACCATGGCTTCCTGGTTCATGTGTTACGCAAGACATGCCTGTAAGTGGGGGTCTTTGGTTAAACCAGTCACTTCCATTCAATATAACTTCATCCAACACAGTATTCCTCTTTAACTGCTCCCCACGCCTCCTAGTTTCTCCTCTTAACTGCACTTCTTCTAGCCTTTGTCATCGCTACTTGGACAACTCAGGACATGTTGACAGAGAAAGAGCACTCCAGTGTGCAAGTGGTCTTGGTCCTTGTTGTACCTTTGTTGCAGGAGGCATGCCTTCAGCATACAAGATACGGCTTCACAGTTCTGGTTGTAAAGCTTTTAGAAGCATTCTTCATTTGGATGTAAAGCAGCCTGCTTATCATTGGGAGGAAGGCCTTGAAATTCAATGGTCTTCTCCTCCTGAACCTATGTGCAGGACACAGCAAGATTGCTCTGGAGAATCTAGGTGCTCCCCAGCTGGTAAAAACGGTGTCTTTCGCTGTCTTTGTAATGGTGGACACCATTGGGACCCTACTGCTGCAACTTGCTTGAAGAACAAGAAAAGATCTAAATCAGAAATTAGCTTGACGGTCTCAATAGCAGTGGTTGCTTTTCTGTGTCTAGCTATAGCTCTGGCCATCATCAAAAAGAGGTCATGGATACTTTCTTATCAGTCAAAGCAGGCCAAAGCAATAGAAGATGTATTCAAATCAAGCACCGGAGAGAAACCTGCCAGGATGTTTCAGCTGAAAGAAGTTATGAAAGCTACAAATGGTTTTTCTAAAGACAGGATTTTGGGGAATGGTGGGTTTGGGGAAGTTTACAGAGGTGAACTTCAAGATGGGACAGTGGTGGCTGTGAAGAAAGCTAGAGTGGGAAACCTCAAAAGCACCCAACAAATACTAAACGAGGTTGCTATTCTCTCTCAAGTCAATCACAAGAACCTTGTCAGACTCTTAGGATGCTGTGTGGAATCTCAAGAGCCTTTCATGATCTATGAGTACATCTCAAACGGGACCCTCCATGACCATCTTCATGGTAGGTATTCTAACTTCCTAGACTGGAAAACAAGGCTCAAGATTGCTTTTCAAACTGCTGAAGCGTTGGCATATCTTCATTCTGCTGCACACACTCCCATTTTCCATAGAGATGTTAAGTCCACAAACATACTGCTAGATGATGAATTTAACGCCAAAGTGTCAGATTTTGGGCTCTCCAGATTGGCTAACCCAGGTCTTAGCCATGTTTCAACCTGTGCCCAGGGAACATTAGGCTACTTGGATCCTGAGTACTACCGAAACTACCAGTTAACCGATAAAAGTGATGTATATAGTTATGGAGTTGTGTTGCTAGAGCTTTTGACTTCCCAGAAGGCCATAGATTTCACTCGAGAGCAAGATGAAGTGAACCTAGCAATCTATGTGAGTCAACATGCCAGCACTGGAACAATCATGGAGGTGATAGATCAGAGGCTTCTAATTTCCATGGGGCCAACTTGTGATAAAGTGAACACAAGCATAGAACTATTCTCAGAGCTTGCATTCAGCTGTCTGAgggagaagaaaaatgaaaggcCTAGTATGAAAGATGTTGTTCAACACCTTCTAAGCATAATTAAGATTGTAGATCAAGAGATGAATAGTGATGAGGGATCTGTTTAA 1923 0.4243 MIIEPTITPRFHGSYVFLLFLSLFLIHHSTSQKTCPNCGSIQIPYPLSTDSSCGDPSYSIHCDPKSKRLFFVSLNGSSYPILRIMPSIQRLVVQPLPWLPGSCVTQDMPVSGGLWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTSSSLCHRYLDNSGHVDRERALQCASGLGPCCTFVAGGMPSAYKIRLHSSGCKAFRSILHLDVKQPAYHWEEGLEIQWSSPPEPMCRTQQDCSGESRCSPAGKNGVFRCLCNGGHHWDPTAATCLKNKKRSKSEISLTVSIAVVAFLCLAIALAIIKKRSWILSYQSKQAKAIEDVFKSSTGEKPARMFQLKEVMKATNGFSKDRILGNGGFGEVYRGELQDGTVVAVKKARVGNLKSTQQILNEVAILSQVNHKNLVRLLGCCVESQEPFMIYEYISNGTLHDHLHGRYSNFLDWKTRLKIAFQTAEALAYLHSAAHTPIFHRDVKSTNILLDDEFNAKVSDFGLSRLANPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFTREQDEVNLAIYVSQHASTGTIMEVIDQRLLISMGPTCDKVNTSIELFSELAFSCLREKKNERPSMKDVVQHLLSIIKIVDQEMNSDEGSV 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3142 640 Gene3D Phosphorylase Kinase; domain 1 308 422 - -
Sto13g3142 640 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 634 IPR045274 GO:0007166
Sto13g3142 640 ProSiteProfiles Protein kinase domain profile. 347 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3142 640 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 25 634 - -
Sto13g3142 640 SMART serkin_6 347 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3142 640 Pfam Protein kinase domain 348 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3142 640 Gene3D Transferase(Phosphotransferase) domain 1 423 638 - -
Sto13g3142 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Sto13g3142 640 CDD STKc_IRAK 353 625 - -
Sto13g3142 640 SUPERFAMILY Protein kinase-like (PK-like) 325 622 IPR011009 -
Sto13g3142 640 Pfam Wall-associated receptor kinase galacturonan-binding 35 91 IPR025287 GO:0030247
Sto13g3142 640 ProSitePatterns Protein kinases ATP-binding region signature. 353 376 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3142 Sto-Chr13 35682169 35684091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3142 35 633 Receptor kinase-like Gene Family AT5G02070 46.815 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sto13g3142 Pkinase 7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3142 - - gmx:100804678 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3142 13 35682169 35684091 Sto13g3142 13 35682169 35684091 ECH