Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3132 ATGCTaattccatcatcatcatcatctctcaCACTACTACCACACCATCTCTGCGAACAATCCCTTGAGAAACAAAGATGTGTGTCCCATGTTTCTGAATTGTTGACATCAAACGACGACGTTCAAAACCTCACTTTGTTACGTTCCTTCTTAATGGAATCTACCTCCCACATTCATAAAGCCATGCACAAATCAAATTCTATCAAGCAGTGGTCCaagaatataaatattcttaaaaatACTACTCCAACTTCAAGGGATCAAGTAGCTTTCTCTAACTGTGAGAAGCTTCTCGAACTTTCCATGCACAGACTTGGAGACTCAATGATGGCTCTTAGGAGTAATAGTAATAGTACGAGGATCCCATTAGAATCCCAGCATGATGCTCACACGTGGCTTACTAGTGTCCTTTCCTACCATGTCACGTGCTTGGAAGGGCTGGAGGGGTTAACAGCACGTGCTTTCATTGAGGCTGACCTGGAGAACTTAATATCGAGAGCAAAAACCTCATTAGACATGTTTGTTGCTATTTTCCCTCCAAAGGAAAAGGATTATGAACAAGCATTAGTTATAGATCAGTTTCCTTCTTGGGTGGCGAGTGAGGATAGGAAGCTTCTAGAGTCTTCTTCTTCGGTTAAGGATGTTATAAAACCCAATGTTGTGGTGGCTAAGGATGGGAGTGGAAACTTCAAGACAGTGAGTGAGGCTGTGGCTTCTGCACCTAATAACGCTCAAAGGAGGTTTGTTATTTTAGTTAAGAAAGGGACGTACGTTGAGCAAGTTAACATCGGAAAAATAAAATCCAATTTGATGCTTGTCGGAGAAGGAATGGATGCTACAATTATCACTGGTAGCTTGAATAATAAAGATGGACGACCCATATCCATCTCTGGCACTATTTCTTCTGATGGTCCTGGATTAATACTGAAAGACCTATGTATCCAAAACACAGCAGGACCACAAAAGGATCAAGCGGTGGCTCTACGGGCGAATGGGGACCGGACGGTGGTGTACCGGTGCCGCATCGAAGCCTTCCAAGACACACTGTACGCTCAAGCACAAAGACAGTTCTACCGCGAGTGCATCATTGCAGGTACGGTGGACTTCATCTTCGGCGACGCTTCCACCGTGATCCAGAACTCTAAAATCATAGCCCGAAGGCCCATGAATGGACAGTCCAACATAGTGACGGCCCAGAAACGGAGCTATCCTAAGGAAAACACAGGGACTTCGATTCAGCATTGTGATATAATACCAAGCCCAGAACTTGGGCCTGTGATTGGGGGCATCAAAACATATCTGGGGCGTCCGTGGGGGAGTTTCTCGCGGACGGTGGTGATGGAGTCGTTCATTGATAAACATGTGGATCCAGCTGGATGGCAAGTTTGGTCGAGTGATGAAGATCCTATGGTGAAGACAAAGACATTGTATTACGGTGAGTATGAGAATAAGGGACCAGGCGCTGACATCAGCAGGAGAGTGAAATGGAGTGGTTTCCATGTGATTACTAACCGGGCTGATGCTTTTAACTTCACTGTGGGACGACTTATAAATGGTGGAGCATGGCTCCCTAGTACTGGGGTTCCCTTCGATGTGGGGCTTTAA 1605 0.4449 MLIPSSSSSLTLLPHHLCEQSLEKQRCVSHVSELLTSNDDVQNLTLLRSFLMESTSHIHKAMHKSNSIKQWSKNINILKNTTPTSRDQVAFSNCEKLLELSMHRLGDSMMALRSNSNSTRIPLESQHDAHTWLTSVLSYHVTCLEGLEGLTARAFIEADLENLISRAKTSLDMFVAIFPPKEKDYEQALVIDQFPSWVASEDRKLLESSSSVKDVIKPNVVVAKDGSGNFKTVSEAVASAPNNAQRRFVILVKKGTYVEQVNIGKIKSNLMLVGEGMDATIITGSLNNKDGRPISISGTISSDGPGLILKDLCIQNTAGPQKDQAVALRANGDRTVVYRCRIEAFQDTLYAQAQRQFYRECIIAGTVDFIFGDASTVIQNSKIIARRPMNGQSNIVTAQKRSYPKENTGTSIQHCDIIPSPELGPVIGGIKTYLGRPWGSFSRTVVMESFIDKHVDPAGWQVWSSDEDPMVKTKTLYYGEYENKGPGADISRRVKWSGFHVITNRADAFNFTVGRLINGGAWLPSTGVPFDVGL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3132 534 Pfam Plant invertase/pectin methylesterase inhibitor 15 153 IPR006501 GO:0004857
Sto13g3132 534 PANTHER PECTINESTERASE 12 530 - -
Sto13g3132 534 Pfam Pectinesterase 219 519 IPR000070 GO:0030599|GO:0042545
Sto13g3132 534 SMART PMEI_2 9 173 IPR006501 GO:0004857
Sto13g3132 534 SUPERFAMILY Pectin lyase-like 216 533 IPR011050 -
Sto13g3132 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 16 171 IPR035513 -
Sto13g3132 534 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Sto13g3132 534 CDD PMEI-like_4 27 177 - -
Sto13g3132 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 15 178 IPR035513 -
Sto13g3132 534 PANTHER PECTINESTERASE 12 530 - -
Sto13g3132 534 Gene3D - 213 534 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3132 Sto-Chr13 35620780 35622611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3132 12 530 Carbohydrate Esterase AT1G11580 47.126 1.01e-164 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3132 K01051 - gmx:100815836 540.421