Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3131 ATGGGCCTGAAAAAGGATAGGGTTTTCGCAGCAAGAAATTGGGCAGCCACAACTGCAGCAGCCGCTATGGTTCTCAAGACTGAACTTTGCCGATTTAGTGGGGCCAAGATCTACCCTGGGAAAGGCATAAGATTTATTCGATCTGATTCTCAGGTTTTCTTGTTCGCCAACTCAAAATGCAAAAGGTACTTCCACAACAGATTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGGAAGCAACATAAGAagGACATTGCCCAAGAAGCTGTGAAGAAGAGGCGCCGCACTACCAAAAAGCCTTACTCTCGATCTATTGTTGGTGCTACTTTGGAAGTTATCCAGAAGAAAAGAACTGAGAAGCCAGAGGTTCGAGATGCTGCTAGGGAAGCTGCTCTTCGTGAAATTAAAGAGAGGATCAAGAAAACCAAGGACGAGAAAAAGGCAAAGAAGGCAGAAGTGATGGCAAAGGCCCAAAAAGCTGGAGGCAAGGGAAACATACCCAAGGGTGCTGCACCTAAAGGCCCTAAAATTGGTGGTGGAGGCGGGAAGCGTTGA 561 0.4688 MGLKKDRVFAARNWAATTAAAAMVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKAQKAGGKGNIPKGAAPKGPKIGGGGGKR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3131 186 Gene3D - 91 161 - -
Sto13g3131 186 MobiDBLite consensus disorder prediction 142 186 - -
Sto13g3131 186 CDD Ribosomal_L24e_L24 25 78 IPR000988 -
Sto13g3131 186 SMART 4TRASH 30 68 IPR011017 -
Sto13g3131 186 Coils Coil 134 158 - -
Sto13g3131 186 ProSitePatterns Ribosomal protein L24e signature. 32 49 IPR023442 -
Sto13g3131 186 PANTHER 60S RIBOSOMAL PROTEIN L24 23 186 - -
Sto13g3131 186 MobiDBLite consensus disorder prediction 142 158 - -
Sto13g3131 186 Pfam Ribosomal protein L24e 26 89 IPR000988 -
Sto13g3131 186 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 28 80 - -
Sto13g3131 186 Gene3D Ribosomal protein L24e 25 86 IPR038630 -
Sto13g3131 186 PANTHER 60S RIBOSOMAL PROTEIN L24 23 186 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3131 Sto-Chr13 35615164 35617335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3131 23 179 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 86.624 2.24e-88 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3131 K02896 - rcu:8274878 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0994 8 6254850 6256780 Sto13g3131 13 35615164 35617335 CCT
Sto13g3131 13 35615164 35617335 Sto13g3131 13 35615164 35617335 ECH