Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3130 ATGGATTGGAATGGAAGCATTAGATCCTTTGTTCCTCGACCAGAATCTTCCTTAAGTTTCCTCTACAATTACAACTACAACTCCACTACCCCATATCATCCAGGAATGGAAGTGAAacatggaggaggaggagggttGGTTGGTGGAGAAATGGAGAGAATGAAGTACGGGGGGAGggagatggagaagaagaagagactaACAAGCGAGCAGATAGAGTCGCTGGAGAGGAGTTTCCAGGAGGAGATAAAGTTGGATCCTGATAGGAAGATGAAGCTTTCAAGGGAGTTAGGACTGCAGCCTCGCCAGATTGCTGTGTGGTTCCAAAATAGGCGTGCTAGGTGGAAGGCCAAGCAGCTTGAGCACTTGTATGATGCCCTCAAACAGGATTTTGATGCTATTTCTCAGGAGAAACAGAAGCTTCAGGAAGAGGTAGTGAAGTTGAAGGCAATACTGAAGGAGCAAGGTTCAAGGACGCAGGTGTCAAACACAGAAGTGTCTGGAGAAGAAACAGTAGAAAGCAGGTCAGAGGCAGGCGTGCGTAGCTCTAACAAGGACCCACGGGGACTTCATCAACACAATAACATTGCAGACCCTAATTGTTCTTTCACTGTGGACGATTATGCCACTGTTTCACTCCCCTATTGGCCTGCCCTGGTGCCTAATTATTATCCCTAA 678 0.4381 MDWNGSIRSFVPRPESSLSFLYNYNYNSTTPYHPGMEVKHGGGGGLVGGEMERMKYGGREMEKKKRLTSEQIESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLEHLYDALKQDFDAISQEKQKLQEEVVKLKAILKEQGSRTQVSNTEVSGEETVESRSEAGVRSSNKDPRGLHQHNNIADPNCSFTVDDYATVSLPYWPALVPNYYP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3130 225 MobiDBLite consensus disorder prediction 170 192 - -
Sto13g3130 225 SUPERFAMILY Homeodomain-like 54 120 IPR009057 -
Sto13g3130 225 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 214 - -
Sto13g3130 225 CDD homeodomain 63 119 IPR001356 GO:0003677
Sto13g3130 225 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Sto13g3130 225 Pfam Homeodomain 63 116 IPR001356 GO:0003677
Sto13g3130 225 Gene3D - 58 126 - -
Sto13g3130 225 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Sto13g3130 225 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Sto13g3130 225 MobiDBLite consensus disorder prediction 157 197 - -
Sto13g3130 225 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Sto13g3130 225 Coils Coil 58 78 - -
Sto13g3130 225 SMART HOX_1 61 122 IPR001356 GO:0003677
Sto13g3130 225 Coils Coil 110 158 - -
Sto13g3130 225 Pfam Homeobox associated leucine zipper 118 152 IPR003106 GO:0006355|GO:0043565
Sto13g3130 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 214 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3130 Sto-Chr13 35611225 35612503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3130 9 148 Homeobox Transcription Factor Family AT5G03790 55.629 1.67e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto13g3130 Homeodomain 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3130 - - gmx:100778007 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3130 13 35611225 35612503 Sto8g0995 8 6259948 6260636 CCT
Sto13g3130 13 35611225 35612503 Sto13g3130 13 35611225 35612503 ECH