Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3117 ATGGACCACAAGGATTTCGCCGTTTTCGCCTCTCCGGGAAACTCACTCTCCGCTTCTCCTCCACAACCCCTCCCTCACCTTCCCAACATGGCGCCACCTGCCACCGCAACAATGATGTCACCGGCTACTACAGCAGGAAGCCAAGGAACTTTTGATTTGTTTGggaaaaagaagagagggagGCCTAGAAAATATGACTCCGACGGGAAGCTTAGACTAACGACGTCGTATCAGGGTGCACCATCGTCGCAGCAACAAGCCTTTTCTCTGTCTCCCACTTCTACTTCCGACTTCTCCGCCAAAAGGGGCCGAGGCAGACCACCTGGGTCAGGCAACCGCCAGATTCTTGCATCATTAGAATTTTGTGTTCTTCTATTTCTTTACTATGGACTAAACAGCGAGTTATTTGCACACACAGCTGGTGGGGATTTTACACCTCATGTGGTCACTGTTCATACTGGAGAGGATGTTGCGGGGAAAATCTTGTCATTCGCCCAGAAAGGTCCTAGAGGGATTTGTATTCTTTCCGCCAATGGAGCTATATCTCATGTCACTATACGCCAGCCTGGTTCATCTGGTGGCTTATTGACTTACGAGGCAAGTCCATTTTTATCTCAGATCTATAATCTATATGCTCTTTCACAACAAAACTAA 654 0.4679 MDHKDFAVFASPGNSLSASPPQPLPHLPNMAPPATATMMSPATTAGSQGTFDLFGKKKRGRPRKYDSDGKLRLTTSYQGAPSSQQQAFSLSPTSTSDFSAKRGRGRPPGSGNRQILASLEFCVLLFLYYGLNSELFAHTAGGDFTPHVVTVHTGEDVAGKILSFAQKGPRGICILSANGAISHVTIRQPGSSGGLLTYEASPFLSQIYNLYALSQQN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3117 217 MobiDBLite consensus disorder prediction 10 111 - -
Sto13g3117 217 PRINTS AT-hook-like domain signature 56 66 IPR017956 GO:0003677
Sto13g3117 217 PRINTS AT-hook-like domain signature 99 110 IPR017956 GO:0003677
Sto13g3117 217 Gene3D - 146 206 - -
Sto13g3117 217 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 20 199 IPR039605 GO:0003680
Sto13g3117 217 MobiDBLite consensus disorder prediction 36 50 - -
Sto13g3117 217 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 186 IPR005175 -
Sto13g3117 217 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 20 199 - -
Sto13g3117 217 MobiDBLite consensus disorder prediction 71 100 - -
Sto13g3117 217 MobiDBLite consensus disorder prediction 54 70 - -
Sto13g3117 217 SUPERFAMILY AF0104/ALDC/Ptd012-like 143 197 - -
Sto13g3117 217 ProSiteProfiles PPC domain profile profile. 141 217 IPR005175 -
Sto13g3117 217 SMART AT_hook_2 56 68 IPR017956 GO:0003677
Sto13g3117 217 SMART AT_hook_2 101 113 IPR017956 GO:0003677
Sto13g3117 217 CDD DUF296 145 203 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3117 Sto-Chr13 35541941 35542948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3117 52 214 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 41.718 2.91e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3117 - - cit:102617101 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3117 13 35541941 35542948 Sto13g3117 13 35541941 35542948 ECH