Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3113 TTGCCTGCGTCCTCTTGCATCGGTGGTAATTTGAAGTTGGCTATGGCGGAACATTTGGCATCCATATTTGGAACAGAAAAGGACAGGGTGAACTGCCCCTTCTACTTCAAGATCGGAGCTTGCAGGCATGGAGACCGCTGTTCCAGACTTCACACCAAGCCTACCATCAGCCCAACTCTGCTTCTCTCCAACATGTACCAGAGGCCCGATATGATCACCCCTGTTGTTGATCCTAATCAAGGCCAGGCACTAGACCCTGACAAGGTCCAGGATCACTTCGAGGATTTCTATGAAGATCTATTCGAGGAGCTGAGCAAGTACGGAGAAATTCAGAGTTTGAATATTTGTGATAATTTGGCTGATCACATGGTTGGTAATGTATATGTTCAGTTCAAAGAGGAAGACCATGCGGCAAATGCATTGTTAAATCTGACTGGAAGGTCTGATCTATTTTCAAGTTTAGTTCTGTGTAGCAGGAGACCCATTATTGTTGACTTCTCTCCTGTAACGGATTTTCGAGAAGCTACTTGTAGGCAGTACGAGGAAAATGTATGTAATCGAGGTGGATACTGCAACTTTATGCACCTGAAGAAGATTAGCAGGGAGTTGAGAAAGCGTTTATTTGGGAGAAGCAGGAGGTATCATGACCGCAGTAGAAGCAGAAGCCGGAGCCCCCCTAGGCATCGGAATCATGATGAGCGTTCACATTCTGGTCGTAATTCTGGTAGGAGAGATTCTGACAGGCATCATGGCCACCATGGTGGTAGGGGTAGGTGGCCTAGAAGCCGAAGTCCTCGACgaagagaaaaaagaagtagaagtcCAGGGGGAAGGGACAGGAGCCCAATCAGAGAAAGTAGTGCAGAAAGGAGAGCTAAAATAGAGCAATGGAACAAGGAGAGGGAGTTGGAAGAATCTGGTAACAAGAATAATAGGAATGACAATGATTATGAACAAGAGACTGGCACACAAAATGGAGATGAATTTGTTATGGTACCTTGTAATATCCATACCATCAACAGTTCATTTTGCCGCTTCTATCTGTTCCTGGACttcaagagagaaaaagtgaGGGACAGGGAAGCGGGCAAGGCTCCAAGCTATTTGACctatattaatattgttgtAGTGGAAGTGGAACTTGTGTGGAGAATAGCTGTTCGATGA 1167 0.4387 LPASSCIGGNLKLAMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLLLSNMYQRPDMITPVVDPNQGQALDPDKVQDHFEDFYEDLFEELSKYGEIQSLNICDNLADHMVGNVYVQFKEEDHAANALLNLTGRSDLFSSLVLCSRRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRKRLFGRSRRYHDRSRSRSRSPPRHRNHDERSHSGRNSGRRDSDRHHGHHGGRGRWPRSRSPRRREKRSRSPGGRDRSPIRESSAERRAKIEQWNKERELEESGNKNNRNDNDYEQETGTQNGDEFVMVPCNIHTINSSFCRFYLFLDFKREKVRDREAGKAPSYLTYINIVVVEVELVWRIAVR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3113 388 PRINTS U2 auxiliary factor small subunit signature 51 71 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto13g3113 388 PRINTS U2 auxiliary factor small subunit signature 188 200 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto13g3113 388 PRINTS U2 auxiliary factor small subunit signature 32 51 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto13g3113 388 PRINTS U2 auxiliary factor small subunit signature 90 105 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto13g3113 388 PRINTS U2 auxiliary factor small subunit signature 153 177 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto13g3113 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 28 51 IPR000571 GO:0046872
Sto13g3113 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 169 IPR000504 GO:0003723
Sto13g3113 388 ProSiteProfiles Zinc finger C3H1-type profile. 171 198 IPR000571 GO:0046872
Sto13g3113 388 SUPERFAMILY RNA-binding domain, RBD 46 177 IPR035979 GO:0003676
Sto13g3113 388 MobiDBLite consensus disorder prediction 272 316 - -
Sto13g3113 388 SMART rrm2_1 82 159 IPR003954 GO:0003676
Sto13g3113 388 Gene3D - 57 168 IPR012677 -
Sto13g3113 388 MobiDBLite consensus disorder prediction 210 324 - -
Sto13g3113 388 PANTHER RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED 15 330 - -
Sto13g3113 388 MobiDBLite consensus disorder prediction 249 271 - -
Sto13g3113 388 MobiDBLite consensus disorder prediction 210 225 - -
Sto13g3113 388 ProSiteProfiles Zinc finger C3H1-type profile. 26 54 IPR000571 GO:0046872
Sto13g3113 388 SMART c3hfinal6 171 197 IPR000571 GO:0046872
Sto13g3113 388 SMART c3hfinal6 27 53 IPR000571 GO:0046872
Sto13g3113 388 MobiDBLite consensus disorder prediction 226 248 - -
Sto13g3113 388 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 15 330 IPR009145 GO:0000398|GO:0003723|GO:0089701
Sto13g3113 388 CDD RRM_U2AF35B 58 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3113 Sto-Chr13 35520432 35523907 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto13g3113 zf-CCCH 6.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3113 K12836 - gmx:100811622 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3113 13 35520432 35523907 Sto13g3113 13 35520432 35523907 ECH