Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3110 ATGAACCCCAAAGACGAAAATTATCCAAAATCTATGGGTAAAGCCCCAGTTGATACCATGTCTTCGCCTAAATTGGAAGAGTTCTCTCCCATTGAGTTGGGATCTCAAGCATTTGCGTTGGATTCTCTATTCGAAGATACATCAGCTGGTCTTGCTACGGCGGATGTTGGTCTTTCTGGTCCTCTTCCCTCGTCCTCCTTCGAAGAAGCATTTCCAGCTATGTACCCGCCGTCtatgttttcttcttcttctcccccTGTTATGGCAATGTCTCTAGGTGAGAGAGCTGCTTCGTTACCACTATCTGTAGTGAAGGAGGCTGGATTAATGACAACAAGCTGTGAGTTTGAGAGCGGTGGTGTGCCACAGCCGCTTGAGCGTTTACAAGGGAACCCGGTACCGCCATTTCTATCTAAAACCTTCGATCTGGTGGATGATCCTTCACTGGATCCGATTATATCGTGGGGCTCCACCGGTGGGAGCTTTGTGGTTTGGGACCCCGTGGAATTTGCAAGGCTCATCTTGCCACGCAATTTCAAGCATAATAATTTTTCCAGTTTTGTCCGCCAGCTAAATACTTATGTGGGTATTGCAGTAGCGCGGCCTATAATAATAGCTGCTGTGATTTGTCtAGTAAGGAAATTTGCTGTTTCAGTGTCTTCTTGTTTGTTATTTGTCAGCAGCAGACTTACATATAATGGCCTTCTAAGGAATACTCCCCCCTTGAGTGTCTACAATATTGGGGATTTCATCTTCCGCATGCAGGGATTCCGCAAGGTTGTTACTGATAAGTGGGAGTTTGCGCATGAAGCTTTTCAGCGAGGGAAAAGACATTTACTAAAGAATATTCATAGGCGCAGGTCACCTCAATCCCAGCAGGTTGGTAGCTATATTGAGCCTTCATCTGAAGCAGGGAAGTCTGGACTTGAGATTGAGATAGAAAGACTGAGGAAGGAAAGAAGTGTGTTAATGCAAGAGGTAGTTGACGTGCAGCAACAACTGCAAAGGACGGTTCGTCATGCAGGAGAAGTAAACCAGAGGCTCCAGTCTGCAGAGCAGAGACAGAAACAAATGGTTTCGTTCTTGacaaagttattaaaaaatccAGCCTTTTTAGCTCATCTTAACCAAAAGAAGGAACATAGAGATATGGGTTCCCCAGGAGCAAGAAGGAAATTTGTCAAGCATCACCAACATGAAACGGGAACATCAGCAGATTCTTTGAAGGAAGGCCAGATTGTGAAATTCCAACCCAGCTGGAGAGAAGTAGCCATCCCTTCTGAAAAACCAGAACCCTATCCAGTTTCCACTGAACAGTCTCCTGACCACCTTTCACAGGGTTTGGCAAGCAAACCAAATGCCAGCACACAGAATCTCGTTTCaataaatgagaatgttgtaTCAGAGGAATCGACTGCAGTGAACAAAATTATGGAAACTTCGGAGATCGTAGGAGAAGGATCACCAATCTTAGAACTTGAAGATCCCCTTTTCAAAGGGAAAAAGATCATGAGCCTAGATCAAGAAATTGTTCCAGAGTTTTCCCCCCTTGGAACTGAAAGCATTGTGCAACAAGAAGATATCTGGAACTCATGCTTTAATTATAGCCATGCTGCTTCTAGCTTTGGGAATGAACTGTGGGGAAATCCAGTCAATTATGATGCGTCATTTGGAGGGACAGGTGATGTATTAGACATATGGGATATGAGCTCTCTGGAAGCAGTAGGAGGTTTGGGTGCAGggcTTGTGGTTTTGAGTATAGATGATGTAGTCCAAATGGGCCTCGGCGATCATCCTTCTGCTAGAGCATTCTTGATCCACCTCAATGCACTCCCCTGA 1839 0.4372 MNPKDENYPKSMGKAPVDTMSSPKLEEFSPIELGSQAFALDSLFEDTSAGLATADVGLSGPLPSSSFEEAFPAMYPPSMFSSSSPPVMAMSLGERAASLPLSVVKEAGLMTTSCEFESGGVPQPLERLQGNPVPPFLSKTFDLVDDPSLDPIISWGSTGGSFVVWDPVEFARLILPRNFKHNNFSSFVRQLNTYVGIAVARPIIIAAVICLVRKFAVSVSSCLLFVSSRLTYNGLLRNTPPLSVYNIGDFIFRMQGFRKVVTDKWEFAHEAFQRGKRHLLKNIHRRRSPQSQQVGSYIEPSSEAGKSGLEIEIERLRKERSVLMQEVVDVQQQLQRTVRHAGEVNQRLQSAEQRQKQMVSFLTKLLKNPAFLAHLNQKKEHRDMGSPGARRKFVKHHQHETGTSADSLKEGQIVKFQPSWREVAIPSEKPEPYPVSTEQSPDHLSQGLASKPNASTQNLVSINENVVSEESTAVNKIMETSEIVGEGSPILELEDPLFKGKKIMSLDQEIVPEFSPLGTESIVQQEDIWNSCFNYSHAASSFGNELWGNPVNYDASFGGTGDVLDIWDMSSLEAVGGLGAGLVVLSIDDVVQMGLGDHPSARAFLIHLNALP 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3110 612 Coils Coil 306 333 - -
Sto13g3110 612 SUPERFAMILY "Winged helix" DNA-binding domain 134 194 IPR036390 -
Sto13g3110 612 Pfam HSF-type DNA-binding 136 286 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g3110 612 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 121 196 IPR027725 -
Sto13g3110 612 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 256 574 IPR027725 -
Sto13g3110 612 SMART hsfneu3 132 286 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g3110 612 Gene3D - 129 287 IPR036388 -
Sto13g3110 612 MobiDBLite consensus disorder prediction 425 456 - -
Sto13g3110 612 MobiDBLite consensus disorder prediction 438 456 - -
Sto13g3110 612 PRINTS Heat shock factor (HSF) domain signature 136 159 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g3110 612 PRINTS Heat shock factor (HSF) domain signature 174 186 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g3110 612 PRINTS Heat shock factor (HSF) domain signature 187 199 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g3110 612 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 121 196 - -
Sto13g3110 612 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 256 574 - -
Sto13g3110 612 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3110 Sto-Chr13 35479986 35483327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3110 112 431 HSF AT5G03720 44.444 7.61e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto13g3110 HSF_DNA-bind 1.4e-26 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3110 13 35479986 35483327 Sto13g3110 13 35479986 35483327 ECH