Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto13g3107 | ATGTCGAGAAGAGTAAGAGTCTCCTGTCTGGGCCATCTTCCGGTGGAGGCATCTCCAGGAAAACAGGCGGCACTAGTATCGCCCTCTGTCTCTAACCCACTACTCAGCGCGGGAGTAGGAGTATTGAGAGGAGCAGAATCGGAGAGGGAGGCAAAGTGCAGCAATAGCAAACCCTCCACCTCCACTGGGCGTCACCCACTCTACAGAGGAGTGAGGCGCAGGAGTAGTGGCAAATGGGTCTCCGAAATTCGTGAGCCCAAGAAGCCCAATAGGATTTGGCTTGGCACTTTCCCTACTCCTGAAATGGCTGCCGTTGCCTACGACGTCGCTGCCCTTGCTCTCAAGGGCTCCCACGCCGACCTCAACTTCCCTAACTCCGCTTCTTCCCTCCCTGTCCCTGCCTCCTCCTCTCCCTCCGACATCCAGATGGCCGCCGCCAGTGCCGCCGCTGCTCTCGGCGCTGCCAATGATGCTTTGTCCTCCTCCGCCGCCACTCCCAAtgcccaagcccaagcccaagcccatgaCACCCTGCAGAGGAGCGCAGTAGAGGACTTCGTGGATGAGGACATGATGTTCGATATGCCCAATGTGCTGCTCAATATGGCGGAAGGAATGCTCCTGGATCCTCCTCCTTTCGACTTCTCTAATTGGGACGCCTCTGCTCATCATTACATCCCTCACGACCCTTATCTCTGGAACTTCCCTAATTAA | 714 | 0.5448 | MSRRVRVSCLGHLPVEASPGKQAALVSPSVSNPLLSAGVGVLRGAESEREAKCSNSKPSTSTGRHPLYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGSHADLNFPNSASSLPVPASSSPSDIQMAAASAAAALGAANDALSSSAATPNAQAQAQAHDTLQRSAVEDFVDEDMMFDMPNVLLNMAEGMLLDPPPFDFSNWDASAHHYIPHDPYLWNFPN | 237 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto13g3107 | 237 | ProSiteProfiles | AP2/ERF domain profile. | 67 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Sto13g3107 | 237 | SUPERFAMILY | DNA-binding domain | 67 | 126 | IPR016177 | GO:0003677 | |
Sto13g3107 | 237 | Gene3D | AP2/ERF domain | 67 | 125 | IPR036955 | GO:0003700|GO:0006355 | |
Sto13g3107 | 237 | CDD | AP2 | 66 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Sto13g3107 | 237 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 50 | 236 | - | - | |
Sto13g3107 | 237 | Pfam | AP2 domain | 66 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Sto13g3107 | 237 | SMART | rav1_2 | 67 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Sto13g3107 | 237 | MobiDBLite | consensus disorder prediction | 48 | 68 | - | - | |
Sto13g3107 | 237 | PRINTS | Ethylene responsive element binding protein signature | 68 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Sto13g3107 | 237 | PRINTS | Ethylene responsive element binding protein signature | 90 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Sto13g3107 | 237 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 | 50 | 236 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto13g3107 | Sto-Chr13 | 35448539 | 35459416 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto13g3107 | 63 | 236 | AP2-EREBP Transcription Factor Family | AT2G36450 | 62.857 | 1.06e-58 | 182 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Sto13g3107 | AP2 | 6.2e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto13g3107 | - | - | gmx:100799620 | 214.927 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Sto8g1033 | 8 | 6477803 | 6478796 | Sto13g3107 | 13 | 35448539 | 35459416 | CCT | |
Sto13g3107 | 13 | 35448539 | 35459416 | Sto13g3107 | 13 | 35448539 | 35459416 | ECH |