Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3107 ATGTCGAGAAGAGTAAGAGTCTCCTGTCTGGGCCATCTTCCGGTGGAGGCATCTCCAGGAAAACAGGCGGCACTAGTATCGCCCTCTGTCTCTAACCCACTACTCAGCGCGGGAGTAGGAGTATTGAGAGGAGCAGAATCGGAGAGGGAGGCAAAGTGCAGCAATAGCAAACCCTCCACCTCCACTGGGCGTCACCCACTCTACAGAGGAGTGAGGCGCAGGAGTAGTGGCAAATGGGTCTCCGAAATTCGTGAGCCCAAGAAGCCCAATAGGATTTGGCTTGGCACTTTCCCTACTCCTGAAATGGCTGCCGTTGCCTACGACGTCGCTGCCCTTGCTCTCAAGGGCTCCCACGCCGACCTCAACTTCCCTAACTCCGCTTCTTCCCTCCCTGTCCCTGCCTCCTCCTCTCCCTCCGACATCCAGATGGCCGCCGCCAGTGCCGCCGCTGCTCTCGGCGCTGCCAATGATGCTTTGTCCTCCTCCGCCGCCACTCCCAAtgcccaagcccaagcccaagcccatgaCACCCTGCAGAGGAGCGCAGTAGAGGACTTCGTGGATGAGGACATGATGTTCGATATGCCCAATGTGCTGCTCAATATGGCGGAAGGAATGCTCCTGGATCCTCCTCCTTTCGACTTCTCTAATTGGGACGCCTCTGCTCATCATTACATCCCTCACGACCCTTATCTCTGGAACTTCCCTAATTAA 714 0.5448 MSRRVRVSCLGHLPVEASPGKQAALVSPSVSNPLLSAGVGVLRGAESEREAKCSNSKPSTSTGRHPLYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGSHADLNFPNSASSLPVPASSSPSDIQMAAASAAAALGAANDALSSSAATPNAQAQAQAHDTLQRSAVEDFVDEDMMFDMPNVLLNMAEGMLLDPPPFDFSNWDASAHHYIPHDPYLWNFPN 237
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3107 237 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Sto13g3107 237 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Sto13g3107 237 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Sto13g3107 237 CDD AP2 66 126 IPR001471 GO:0003700|GO:0006355
Sto13g3107 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 50 236 - -
Sto13g3107 237 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Sto13g3107 237 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Sto13g3107 237 MobiDBLite consensus disorder prediction 48 68 - -
Sto13g3107 237 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Sto13g3107 237 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Sto13g3107 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 50 236 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sto13g3107 Sto-Chr13 35448539 35459416 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3107 63 236 AP2-EREBP Transcription Factor Family AT2G36450 62.857 1.06e-58 182
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g3107 AP2 6.2e-12 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3107 - - gmx:100799620 214.927
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1033 8 6477803 6478796 Sto13g3107 13 35448539 35459416 CCT
Sto13g3107 13 35448539 35459416 Sto13g3107 13 35448539 35459416 ECH