Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3101 ATGGACTTATATGTGAAGCAATGGGGAAAGCAGCATGAGTCAGAGGCGGAGGAACAACAATCTGCAAAGATGCCTAAACTTGTGCTTCAACCTCATCAAAAGCCTCAACCATCTGCTCTCCCTTTGTTTGTACATGAACCCTACACTAAAGTCAGCACCTTGTCAGCATTCTCTGATTCAACATTACCCACTCCCAGATTTCCCCGGATGGGGAGTTATTTCAGCTTGGCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATTTTTAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCCGAGCTTCTTCACTCTGTCAAGAAAAGCCTTCTTCATTCCCCTCCCTATTTCCTCCCACATTACCCTCTTTATAATGACCCTGCTTGCATTTTTAAAGATTCTGTCTTGATCCTAGGGTGTTTCTTTGTTGGAGCAGCGTTACAGTCAGCGTATTGGGGAAGAGTAGCCATGGATCCAGAGCCTGGCCGGTGCCGGAGGACCGACGGCAAGAAGTGGCGGTGCTCCAGGGACGTGGTGGCTGGTCAGAAGTATTGCGAACGCCACATGCATCGAGGTCGAAACCGTTCAAGAAAGCCCGTGGAACTACCCACAGCCACCGGAGGCTCTGGCGGCGGCGGTGGGCGTCTCGGTGCTACCACCTCCATTAATACGCCGTCATTGGCAACGGGTTCGCTGAAATCCCCTTTCGATGTCCTTCATCTTGATCGAAGTTCCTCTGGGACCAAGAACCAACACAAGGGACTGTTCGGAATCCAAGATGATATGTGTGGGGATGGAAGATCTGACGGCCATACCCTGAGGCGTTTTTTCGATGATTGGCCACGATCAGTTGAAGAGTCATATAATGGTGAAAGCAATGCAAGTTGCACCAACTCGACGACATGTCTGTCTATTTCAGAACCTGGGATTGGGAGTACTTCGTCGGATGTGTCTTTGAAATTGTTCACTGGCAATGGAGAAAATCCTTGTTCAAGAAACGGAAATGTTGGCAGAGAGCAAGCGCAGTTAAATTGGGGAGGAGGATGGAATTCGGCTAATGTAGGAGGACCACTTGCAGAGGTTCTCAGATCATCTTCTTCAACTTCTACACCACACACTCTTGTTGTACGTCAAATGCCTCGTGCCTCTACCTCGGACTCCAGCTTCATCACTTCCTGA 1179 0.4962 MDLYVKQWGKQHESEAEEQQSAKMPKLVLQPHQKPQPSALPLFVHEPYTKVSTLSAFSDSTLPTPRFPRMGSYFSLAQWQELELQALIFRYMLAGAAVPPELLHSVKKSLLHSPPYFLPHYPLYNDPACIFKDSVLILGCFFVGAALQSAYWGRVAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTATGGSGGGGGRLGATTSINTPSLATGSLKSPFDVLHLDRSSSGTKNQHKGLFGIQDDMCGDGRSDGHTLRRFFDDWPRSVEESYNGESNASCTNSTTCLSISEPGIGSTSSDVSLKLFTGNGENPCSRNGNVGREQAQLNWGGGWNSANVGGPLAEVLRSSSSTSTPHTLVVRQMPRASTSDSSFITS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3101 392 MobiDBLite consensus disorder prediction 1 24 - -
Sto13g3101 392 Pfam WRC 159 201 IPR014977 -
Sto13g3101 392 Pfam QLQ 74 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sto13g3101 392 MobiDBLite consensus disorder prediction 1 20 - -
Sto13g3101 392 ProSiteProfiles WRC domain profile. 158 202 IPR014977 -
Sto13g3101 392 PANTHER - 8 391 IPR031137 GO:0005634|GO:0006351|GO:0032502
Sto13g3101 392 PANTHER GROWTH-REGULATING FACTOR 3 8 391 - -
Sto13g3101 392 MobiDBLite consensus disorder prediction 192 219 - -
Sto13g3101 392 MobiDBLite consensus disorder prediction 363 392 - -
Sto13g3101 392 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sto13g3101 392 SMART QLQ_2 72 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3101 Sto-Chr13 35407415 35409380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3101 1 379 GRF Transcription Factor Family AT3G52910 45.885 6.40e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Sto13g3101 WRC 2.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3101 - - qlo:115953466 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1037 8 6517784 6519907 Sto13g3101 13 35407415 35409380 CCT
Sto13g3101 13 35407415 35409380 Sto13g3101 13 35407415 35409380 ECH