Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3071 ATGGAGAGCTTCGATGAAGGTTTTGAGCTGAAGGAGATTCAGACACTTGAAGGTCACTCcgatagggtttggagtttggcttGGAATCCTGCTACTGGCCATTCTGGAATCCCTCTTGTCTTTGCTTCTTGTAGCGGCGACAAAACCGTCCGAATCTGGGAGCAGAATATCTCTTCTGGTCTTTGGAACTGCAAGGCAGTTTTGGAAGAAACACACACTAGAACAGTTCGATCCTGTGCTTGGTCACCATCTGGGAAACTGTTGGCTACTGCCAGCTTTGATGCCACTACTGCTATATGGGAAAATGTTGGGGGTGATTTTGAGTGTGTGTCTACTCTGGAGGGTCATGAAAATGAAGTGAAGAGTGTGTCTTGGAATGCATCTGGATCCCTGCTTGCAACATGTGGTAGAGATAAATCTGTTTGGATATGGGAAGTACAGCCAGGTAATGAGTTTGAGTGTGTGTCGGTGCTGCAAGGACATACACAAGATGTGAAGATGGTGCAATGGCATCCCACAATGGATATATTATTTTCAAGTAGCTATGATAATAATGTTAAGGTTTGGGCTGATGAAGGTGACAGTGATGATTGGCAGTGTGTCCAAACTATAGGAGAATCTAACAACGGTCATACTTCTACTGTTTGGGCCCTCTCCTTCAATGCTAGTGGAGACAAAATGGTTACCTGTAGTGATGATCTTACCTTGAAGGTATGGGAAACAGACAACATAGGGATGCAATCTGGAAATGGGGTTCCACCTTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATCTTCTCGGTTCATTGGTCCAGAGAAGGTATCATTGCCAGTGGAGCAGCTGATGATGCTATACGACTTTTTGTGGAGAATAATGAAAGAATGGTTGGTGGCCCTATGTATAAATTGCTGCTGAAGAAGGAGAAGGCCCATGACATGGACGTAAATTCAGTGCAGTGGAGTCCCGGGGATAAGCGGCTGCTAGCCTCTGCAAGCGATGATGGGACTATCAAGGTGTGGGAGCTGGCAACTCTGTGA 1050 0.4476 MESFDEGFELKEIQTLEGHSDRVWSLAWNPATGHSGIPLVFASCSGDKTVRIWEQNISSGLWNCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNASGSLLATCGRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVQWHPTMDILFSSSYDNNVKVWADEGDSDDWQCVQTIGESNNGHTSTVWALSFNASGDKMVTCSDDLTLKVWETDNIGMQSGNGVPPWRHLCTLTGYHDRTIFSVHWSREGIIASGAADDAIRLFVENNERMVGGPMYKLLLKKEKAHDMDVNSVQWSPGDKRLLASASDDGTIKVWELATL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3071 349 PRINTS G protein beta WD-40 repeat signature 41 55 IPR020472 -
Sto13g3071 349 PRINTS G protein beta WD-40 repeat signature 227 241 IPR020472 -
Sto13g3071 349 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Sto13g3071 349 ProSitePatterns Trp-Asp (WD) repeats signature. 332 346 IPR019775 -
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 243 IPR001680 GO:0005515
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 54 IPR001680 GO:0005515
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 243 - -
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 69 101 IPR001680 GO:0005515
Sto13g3071 349 ProSitePatterns Trp-Asp (WD) repeats signature. 132 146 IPR019775 -
Sto13g3071 349 ProSitePatterns Trp-Asp (WD) repeats signature. 227 241 IPR019775 -
Sto13g3071 349 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 7 347 - -
Sto13g3071 349 CDD WD40 12 345 - -
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 158 189 - -
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 349 - -
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 113 147 - -
Sto13g3071 349 PANTHER WD40 PROTEIN CIAO1 7 347 IPR028608 GO:0016226|GO:0097361
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 69 101 - -
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 113 154 IPR001680 GO:0005515
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 54 - -
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 158 189 IPR001680 GO:0005515
Sto13g3071 349 Pfam WD domain, G-beta repeat 108 144 IPR001680 GO:0005515
Sto13g3071 349 Pfam WD domain, G-beta repeat 11 53 IPR001680 GO:0005515
Sto13g3071 349 Pfam WD domain, G-beta repeat 63 100 IPR001680 GO:0005515
Sto13g3071 349 Pfam WD domain, G-beta repeat 198 239 IPR001680 GO:0005515
Sto13g3071 349 Pfam WD domain, G-beta repeat 313 344 IPR001680 GO:0005515
Sto13g3071 349 Pfam WD domain, G-beta repeat 153 189 IPR001680 GO:0005515
Sto13g3071 349 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 8 348 IPR028608 GO:0016226|GO:0097361
Sto13g3071 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 349 IPR001680 GO:0005515
Sto13g3071 349 SMART WD40_4 106 145 IPR001680 GO:0005515
Sto13g3071 349 SMART WD40_4 9 54 IPR001680 GO:0005515
Sto13g3071 349 SMART WD40_4 254 293 IPR001680 GO:0005515
Sto13g3071 349 SMART WD40_4 151 190 IPR001680 GO:0005515
Sto13g3071 349 SMART WD40_4 197 240 IPR001680 GO:0005515
Sto13g3071 349 SMART WD40_4 61 101 IPR001680 GO:0005515
Sto13g3071 349 SMART WD40_4 304 345 IPR001680 GO:0005515
Sto13g3071 349 Gene3D - 39 348 IPR015943 GO:0005515
Sto13g3071 349 SUPERFAMILY WD40 repeat-like 9 344 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3071 Sto-Chr13 35268364 35272663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3071 84 349 U-box Gene Family AT2G33340 26.217 2.12e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3071 K24730 - gmx:100778826 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3071 13 35268364 35272663 Sto13g3071 13 35268364 35272663 ECH