Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3069 ATGGATTATGCTGCTCGGAGAAATAAAGGTGGTCTTCTCGAAGGTCTTTACAAGGTGATTATGCGCCGGAACTCCGTCTATGTCACATTTATCATAGCCGGCGCTTTCATCGGAGAACGGGCAGTGGATTATGGTGTTCACAAGCTCTGGGAGTACAATAATGTTGGGAAACGATATGAAGACATTCCAACGTTGGGGCAGAGGCAGTCAGAATCTAAGCTACAAAGTGATGCACTGAGAGAGGCCATAGCCCAGCTTGTTGCTAATGCAAAGGAGAAAAAACGTAATTTCACTGAGACTATTGAGCTGCAAATTGGGTTGAAGAACTATGACCCCCAAAAAGACAAGCGTTTTAGTGGCTCTGTTAAGCTTCCTCATATTCCTCGCCCTAAGATGAAGATTTGCATGCTTGGTGATGCTCAGCATGTGGAGGAGGCAGAAAAAATAGGACTGGATTACATGGATGTGGAAGCGCTGAAAAAGcttaataaaaacaagaaactcGTCAAGAAGCTTGCCAAGAAGTATCATGCATTTCTAGCATCTGAAGCTGTCATCAAGCAAATTCCTCGTCTTTTGGGCCCTGGTAAGTTTCCAACACTGGTGACACATCAAGAATCCTTGGAGTCAAAAGTTAATGAAACAAAAGCAATGGTGAAGTTTCAACTTAAGAAAGTTCTTTGTATGGGTGTTGCTGTTGGAAACTGCACAATGGAGGAGAAGCAAATCTTCCAGAACGTACAACTTAGTGTCAATTTCCTTGTTTCCTTGTTAAAGAAGAACTGGCAAAATGTGAGGTGCTTATACCTTAAGAGTACTATGGGTAGTGCAATCCGCGtattttag 846 0.4184 MDYAARRNKGGLLEGLYKVIMRRNSVYVTFIIAGAFIGERAVDYGVHKLWEYNNVGKRYEDIPTLGQRQSESKLQSDALREAIAQLVANAKEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGSAIRVF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3069 281 Pfam Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like 15 63 IPR008027 GO:0005750|GO:0006122
Sto13g3069 281 CDD Ribosomal_L1 79 280 IPR028364 -
Sto13g3069 281 Gene3D - 10 65 IPR036656 GO:0005750|GO:0006122
Sto13g3069 281 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 72 279 - -
Sto13g3069 281 Coils Coil 76 96 - -
Sto13g3069 281 Gene3D - 71 189 - -
Sto13g3069 281 Gene3D - 201 279 - -
Sto13g3069 281 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 72 279 - -
Sto13g3069 281 SUPERFAMILY Ribosomal protein L1 84 281 IPR023674 -
Sto13g3069 281 SUPERFAMILY Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 12 63 IPR036656 GO:0005750|GO:0006122
Sto13g3069 281 Pfam Ribosomal protein L1p/L10e family 91 275 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3069 Sto-Chr13 35254343 35261837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3069 72 281 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 85.581 3.11e-120 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3069 K02865 - gmx:100527763 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3069 13 35254343 35261837 Sto13g3069 13 35254343 35261837 ECH