Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3060 ATGCTGGGGATGAGGGGTAGTGATGTAGAAGCCCAAAATCCAGAGTCACCAGAGAAGCATAGTGATGCTGAAAAGCCTACAGCTTCTGAAAAAATGGTAGATTTTGACGGAGACAATGTTAAAGAAGATGCCATGGAAGAAGAAGTTGAATATGAAGTAGAGGAGGAGGAAGTGAAAGAGGAAGATACTGAAGGGGCTGCCAATGGAGATGGTGTTGACAAAGGCTTGGATGGTGAAGATGAGAAAAAGAAGCATGCAGAGCTTCTTGCACTTCCACCTCATGGATCAACGGTTCACATTGGTGGCATTCCTCATGATGCTTCTGAAGAGGATTTGACAGCCTTTTGTCAATCTGTGGGAGATGTCTCAGAGGTTAAGATTATGAAGGGAAAAGTACGTGTTGGTTCTAAATGTTATGCTTTTGTGACCTTCAAGACAAAAGAGATGGCTTCTGAGGCTATTGATAAGCTGAACATGACTAAATTTCAGggaaatgaaataaaatgctCAACATCTCTACTAGAGCATCGGCTGTTTATCGGTAATGTTCCTAGGAATTGGACTGAGCAAAATTTGAGGAAGGCTGTTACAGAGATTGGGCCTGGAGTCAATTCAATCAAACTGTTCAAGGAACATAATTCGGCCTGTAATCGGGGCTTTGCTTTTATTGATTATTACAATCATGCATGCGCAGACTATTCAAGGCAGAAGATGtcaaacccaaaatttaaacTTGACAACAATGCTCCAACAGTCAACTGGGCACTGTGGAATGCTGACTCATCTCCAGCCTCCCAGGTAAAGACATTGTATGTAAGTAATCTACCAGAGAATATTACTCCGTATCGTCTCAAGGGATTGTTTGAACATCATGGAAAGATCACAAAAGTGGAACTCCCTCCTGCAAAAGCAGGACTTGAGAAGAGAAGATTTGGTTTTGTTCATTTTGCTGAGACGTCAGGTGCCACAAAGGCGTTGAACAATACTGAGAAATATGAAGTTTATGgccaagttttaaattgttcACTTGCAAGGCAACAAGCAGATCGGAAATCACCTGGGAAACCAAATTCACAGAACTTGGCCAGACTTCCAACCTATCCACCTCATACTGGTTATGGTATGGTTGGAGGTGCCCATGGTGCTATGGGTGCAGCATATGGTGGCGCTAGCTTTACACAACCACTGGTTTATGGTAGGGGTGCAACTTCTGCTGGGTTGCTGATGATGCCAATGCTTTTACCCTATGGAAGGATTGAATATGTATTGCAACAGCCATGGttgcaacaacaacaacaacaagccCCTTCATCAGCATCCCAAGGTGGCAGTAATAGCGGAAGAAGCTCAAGTGGTGGGAAATACAGTAATGATAAGAACCGTAGTAGATATCATCCCTACTAA 1404 0.4103 MLGMRGSDVEAQNPESPEKHSDAEKPTASEKMVDFDGDNVKEDAMEEEVEYEVEEEEVKEEDTEGAANGDGVDKGLDGEDEKKKHAELLALPPHGSTVHIGGIPHDASEEDLTAFCQSVGDVSEVKIMKGKVRVGSKCYAFVTFKTKEMASEAIDKLNMTKFQGNEIKCSTSLLEHRLFIGNVPRNWTEQNLRKAVTEIGPGVNSIKLFKEHNSACNRGFAFIDYYNHACADYSRQKMSNPKFKLDNNAPTVNWALWNADSSPASQVKTLYVSNLPENITPYRLKGLFEHHGKITKVELPPAKAGLEKRRFGFVHFAETSGATKALNNTEKYEVYGQVLNCSLARQQADRKSPGKPNSQNLARLPTYPPHTGYGMVGGAHGAMGAAYGGASFTQPLVYGRGATSAGLLMMPMLLPYGRIEYVLQQPWLQQQQQQAPSSASQGGSNSGRSSSGGKYSNDKNRSRYHPY 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3060 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 346 IPR000504 GO:0003723
Sto13g3060 467 PANTHER - 13 464 - -
Sto13g3060 467 MobiDBLite consensus disorder prediction 346 365 - -
Sto13g3060 467 CDD RRM_SF 98 170 - -
Sto13g3060 467 Gene3D - 176 255 IPR012677 -
Sto13g3060 467 Coils Coil 41 64 - -
Sto13g3060 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 257 IPR000504 GO:0003723
Sto13g3060 467 SUPERFAMILY RNA-binding domain, RBD 263 366 IPR035979 GO:0003676
Sto13g3060 467 MobiDBLite consensus disorder prediction 64 78 - -
Sto13g3060 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Sto13g3060 467 SMART rrm1_1 269 342 IPR000504 GO:0003723
Sto13g3060 467 SMART rrm1_1 177 253 IPR000504 GO:0003723
Sto13g3060 467 SMART rrm1_1 97 170 IPR000504 GO:0003723
Sto13g3060 467 MobiDBLite consensus disorder prediction 430 467 - -
Sto13g3060 467 MobiDBLite consensus disorder prediction 346 366 - -
Sto13g3060 467 MobiDBLite consensus disorder prediction 1 78 - -
Sto13g3060 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 243 IPR000504 GO:0003723
Sto13g3060 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 339 IPR000504 GO:0003723
Sto13g3060 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 168 IPR000504 GO:0003723
Sto13g3060 467 MobiDBLite consensus disorder prediction 12 39 - -
Sto13g3060 467 MobiDBLite consensus disorder prediction 430 457 - -
Sto13g3060 467 PANTHER GEO13361P1-RELATED 13 464 - -
Sto13g3060 467 MobiDBLite consensus disorder prediction 40 63 - -
Sto13g3060 467 Gene3D - 7 175 IPR012677 -
Sto13g3060 467 Gene3D - 257 381 IPR012677 -
Sto13g3060 467 SUPERFAMILY RNA-binding domain, RBD 92 242 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3060 Sto-Chr13 35208634 35211477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3060 136 464 Eukaryotic Initiation Factors Gene Family AT1G71770 22.995 8.31e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3060 K13161 - cpap:110822724 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3060 13 35208634 35211477 Sto13g3060 13 35208634 35211477 ECH