Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3050 ATGCAGATATTCGTGAAAACCCTAACTGGGAAGACAATTACTCTCGAGGTAGAGAGCAGCGACACTATAGACAATGTTAAGTCTAAAATCCAAGACAAGGAAGGTATCCCACCGGATCAGCAGCGTTTGATATTTGCTGGCAAGCAGCTCGAAGATGGTCGAACTTTAGCCGATTACAACATTCAAAAGGAGTCCACCCTTCATCTTGTGCTGAGACTTCGTGGAGGTATCATAGAGCCTTCGCTGATGGCTTTGGCTCGTAAATACAACCAAGATAAGATGATCTGCCGCAAATGCTATGCTCGTCTACATCCAAGGGCTGTAAACTGCCGTAAAAAGAAGTGTGGTCACAGTAATCAGTTGAGGCCAAAGAAGAAGATCAAGTAA 387 0.4444 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3050 128 Gene3D - 79 128 IPR038587 -
Sto13g3050 128 SMART ubq_7 1 72 IPR000626 GO:0005515
Sto13g3050 128 SUPERFAMILY Zn-binding ribosomal proteins 76 127 IPR011332 GO:0006412
Sto13g3050 128 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Sto13g3050 128 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735|GO:0005840|GO:0006412
Sto13g3050 128 Gene3D - 1 78 - -
Sto13g3050 128 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Sto13g3050 128 PANTHER UBIQUITIN-60S RIBOSOMAL PROTEIN L40 1 125 - -
Sto13g3050 128 CDD Ubl_ubiquitin 1 76 - -
Sto13g3050 128 PRINTS Ubiquitin signature 11 31 IPR019956 -
Sto13g3050 128 PRINTS Ubiquitin signature 32 52 IPR019956 -
Sto13g3050 128 PRINTS Ubiquitin signature 53 74 IPR019956 -
Sto13g3050 128 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Sto13g3050 128 Pfam Ribosomal L40e family 78 127 IPR001975 GO:0003735|GO:0005840|GO:0006412
Sto13g3050 128 PANTHER UBIQUITIN 1 125 - -
Sto13g3050 128 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3050 Sto-Chr13 35139635 35141352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3050 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.438 3.41e-92 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3050 K02927 - psom:113301572 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3050 13 35139635 35141352 Sto13g3050 13 35139635 35141352 ECH