Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3040 ATGTCCATAAATCAGCACTCATCGGCCACGACGACACAGTGGTGGGATAGGAATAGGAATACTACTAGTCATCATCATCCAGTAGTGATGCAAAACCCCTCCTCCCTTTGCTCATGGCAGGAGGACAAGGTTAAGAGTATTGGagtggaagaggaagaggaaaagGAAGCGATGTTCGAGAAGCCATTGACGCCGAGTGACGTGGGGAAGCTGAACCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCGCTGGGAGGAGGTGATCAGTCGTCGTCCGGGGTGTCGCTGAGTTTCGAGGACGAGTCAGGCAAGTGCTGGCGCTTCCGTTACTCCTATTGGAACAGTAGCCAGAGCTACGTCTTGACCAAAGGATGGAGCCGATACGTCAAGGACAAGCGCCTCCACGCAGGCGACGTCGTTTTCTTCCAGCGCCACCGCACCGACTCCACCCGCCTCTTCATCAACTGGAGGCGCCGCCACACCCCCACAACACCTGCTCCCCTTCCTCACGCCAATACCAATAATAACAATGTTGGTGTGGGTGTGGGTGTGGAGTGGACCCCAGGTTTCTATTCTGCGCATCCTTATCCTACGCATCCTCATCACCCCTGGACATACCAACAACCTCACTCTCTTCATGCACCTCCAGgaggaggaggagcaTTGGAAGGAGATGAGAACAAAGCGACGTCGTCAGCGGTGGGGAACAGGTCGAGGGTACTGAGGCTGTTCGGAGTAAACATGGAGTGGCAACCCGACCAATCCGGATCCTCCATACCCGAATGCCCCTACATGTCATCAACACAGGGTACAGCTACCCAGCAACACCACCAGTTCTACGCCGCCCATTATTATCATCAACCCTCTTATTCTTCCAATCACATGGTACGTCAACAACCACACTTCtag 918 0.5207 MSINQHSSATTTQWWDRNRNTTSHHHPVVMQNPSSLCSWQEDKVKSIGVEEEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGDQSSSGVSLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFQRHRTDSTRLFINWRRRHTPTTPAPLPHANTNNNNVGVGVGVEWTPGFYSAHPYPTHPHHPWTYQQPHSLHAPPGGGGALEGDENKATSSAVGNRSRVLRLFGVNMEWQPDQSGSSIPECPYMSSTQGTATQQHHQFYAAHYYHQPSYSSNHMVRQQPHF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3040 305 MobiDBLite consensus disorder prediction 205 237 - -
Sto13g3040 305 Gene3D - 48 169 IPR015300 -
Sto13g3040 305 ProSiteProfiles B3 DNA-binding domain profile. 59 163 IPR003340 GO:0003677
Sto13g3040 305 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 17 276 - -
Sto13g3040 305 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 17 276 IPR044800 GO:0003700
Sto13g3040 305 CDD B3_DNA 58 153 IPR003340 GO:0003677
Sto13g3040 305 Pfam B3 DNA binding domain 59 162 IPR003340 GO:0003677
Sto13g3040 305 SUPERFAMILY DNA-binding pseudobarrel domain 56 162 IPR015300 -
Sto13g3040 305 SMART B3_2 59 163 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3040 Sto-Chr13 35075872 35077336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3040 52 257 RAV Transcription Factor Family AT5G06250 51.628 4.34e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto13g3040 B3 5.4e-30 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3040 - - aprc:113872948 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1100 8 6932766 6933752 Sto13g3040 13 35075872 35077336 CCT
Sto13g3040 13 35075872 35077336 Sto13g3040 13 35075872 35077336 ECH