Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3018 ATGTCTGGCGGCGGTGGAGCTTCAAACCGCCGGGCATCGCCGCCACCGGAGGCTTCCTCTGTCCAGAATCGGCCGCCACTTAAGCGTCATCTGGCGTTCGCATCGACTAAGCCGCCATTTGTCCCCCCGGATGATTATCACACCTTCTCCACTTCCGACTCTAGGAGAGCTGCCGATCAAGAGTCTGAAGCTGTTGTTGTTAGATCTCCAAACCTGCTGGTTTGGTGTCAGTACATGAAGCGGAAGAGTATAGTGAATGACAACAATGGAGATTCACAGGAGTGGAGTAACAGCCCTGGACCTACTAATGCAATGAATAGTCCCTTCAAAACTCCTGTGTCTGCAAAAGGGGGAAGAACATACAATAAGTCAAAAGCTGCAAAGGAAGGCAGATCTGGTCCTCAGACTCCCATCTCAAATGCTGGTTCCCCTTCTCTAACACCTGCTGGAAGCTGTCGTTATGACAGTTCGTTGGGTTTGCTGACTAAAAAGTTCATCAATTTGCTCAAGCACGCAGAAGATGGTGATCTTGACCTAAATAAAGCAGCAGAAACGTTGGAGGTGCAAAAGAGGAGGATATATGACATAACCAACGTTTTGGAAGGAATTGGTCTCATTGAGAAAAAGCTCAAAAATAGAATACATTGGAAGGGAATTGATTCTTGTACATCCGGGGAGCTGGATGGCGATGTATCTATGCTAAAGGCAGAAGTTGAGAAGCTTTCCTTGGAAGAGCAAAGTTTAGATGATCAAATAAGGGGAATGAAGGAAAGGCTGAGGAATTTGAGTGAAGATGAAAAAAACCAGAAGTAA 813 0.4637 MSGGGGASNRRASPPPEASSVQNRPPLKRHLAFASTKPPFVPPDDYHTFSTSDSRRAADQESEAVVVRSPNLLVWCQYMKRKSIVNDNNGDSQEWSNSPGPTNAMNSPFKTPVSAKGGRTYNKSKAAKEGRSGPQTPISNAGSPSLTPAGSCRYDSSLGLLTKKFINLLKHAEDGDLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIDSCTSGELDGDVSMLKAEVEKLSLEEQSLDDQIRGMKERLRNLSEDEKNQK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3018 270 MobiDBLite consensus disorder prediction 133 147 - -
Sto13g3018 270 SUPERFAMILY E2F-DP heterodimerization region 231 270 IPR037241 -
Sto13g3018 270 SUPERFAMILY "Winged helix" DNA-binding domain 153 216 IPR036390 -
Sto13g3018 270 Pfam E2F/DP family winged-helix DNA-binding domain 155 218 IPR003316 GO:0005667|GO:0006355
Sto13g3018 270 Gene3D - 225 270 - -
Sto13g3018 270 MobiDBLite consensus disorder prediction 86 110 - -
Sto13g3018 270 MobiDBLite consensus disorder prediction 1 64 - -
Sto13g3018 270 MobiDBLite consensus disorder prediction 86 147 - -
Sto13g3018 270 PANTHER TRANSCRIPTION FACTOR E2F 18 270 IPR015633 GO:0000978|GO:0006357
Sto13g3018 270 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 18 270 - -
Sto13g3018 270 Coils Coil 231 265 - -
Sto13g3018 270 SMART E2F_TDP_2 153 218 IPR003316 GO:0005667|GO:0006355
Sto13g3018 270 Gene3D - 147 220 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3018 Sto-Chr13 34948755 34951541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3018 25 270 E2F-DP Transcription Factor Family AT2G36010 60.920 1.33e-89 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sto13g3018 E2F_TDP 2.3e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3018 K06620 - gmx:100811762 372.474