Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3002 ATGGAAGTGTGCCGTTTCAAGCTTGTTTCCGTGCTCGTTCTCTCTCTTGCTGCAGTGGTTTTCTGTGTCACTGACCCAAATGATGTTAAGATTCTCAACGACTTCAGAAAAGGATTGGACAACCCTGAGCTCTTGCCGTGGCCGGAAGACGGTGGGGACCCCTGCGGTAGTCCTTCTTGGAAGTATATTTACTGCAAGGGAAGCAGAGTTTCCCAGATTCAAGCCAAGAACTTGAACCTGAGTGGCCCTCTCCCTCAGAATTTCAATCAGCTCTCCATGCTCTCTAACATAGGCCTTCAGAATAATAGATTGAACGGACCGTTACCATCTTTCAGTGGGTTAGCTCAGTTGAAATATGCTTATTTGGATTACAATGCCTTCGATTCGATTCCCGCCGATTTCTTTGATGGGCTTGTGAGTCTCGAAGTTATGGCATTGGATCACAACAATCTAAATGCAAGTACTGGATGGCAATTCCCCTCTCACTTGCAGGATTCAACGCAGCTAACCAATCTCTCTTGTATGAGTTGCAACTTAGCCGGTCCACTGCCGAGTTTTCTGGGgaacttctcttctctctctgtTTTAAAACTTTCCGACAACAGTTTAACCGGCGAAATCCCGTCGACTTTTACCGGCAAGACGTTGCAGGTTTTATGGCTGAATAATCAGCGCGGCGGCGGTCTCACGGGTTCTATTGATGTTGTGGCAACGATGACGTCGCTTATCAGTCTGTGGCTTCACGGGAACCAGTTCACCGGGACAATTCCGGCGAACATTGGGGATTTAACTCTTCTGAAGGATCTCAATCTCAATGGTAATCAACTCGTTGGCCTAATCCCGGAGGCTTTAGTTGATTCGTGGACTGGTAATAACCCATGCGAGGGGCCGTGGTTGGGAATGAAGTGTGATGCTAATGGAAAGGTAACTATGATTAATTTGCCCAACTTTAATCTTAATGGTACTCTCAGTCCTCGGGTTGCAAACATGAGTTCTCTTGTAGCGATCAGATTGGCGGGTAACCACCTTACTGGGGTTATACCCAATGAATGGACTAGCTTAAAATCTTTGACATTGTTGGATATAAGTGGCAATAACATTTCTCCTCCTCTGCCAAATTTCAGTagcaatttgaaacttttgactAATGGGAATCCTTTACTAAATGGCAGCCCGGAGGCCCCTTCATCTGGGAATGCTGAGCCTCCTCCTAATACTCCATCGTCTCCAACACACTCAAGTTCTAATTCAAATAATACTCTTGAATCACACCATTCCAAAAGGAAAAATTTGGTTGTAATTGTAGCACCCATCGCAGGTATAGCGGCTGCAGCTTTTCTGCTCATTCCCTTGTCCATTTATTGTTTCAAGAGGAGAAGAGAAAACGTTGAGGCTCCAAATTCACTAGTAATTCACCCTAGAGATCCTTCTTATTCAGATAATATGATTAAGATTGCTGTTGCTAACACCAATGGAAGCACTTCCACAATTACAGGGAGTGGATCTGGGAGTATAAATAGCAGTGGAGTTAGGGATTCTCATGTCATTGAAGCTGGGAATCTCGTGATATCAGTTCAAGTTCTTAGAAATGTGACAAATAATTTTGCCTCAGAGAATGAGCTTGGCCGTGGTGGATTTGGGGTCGTTTATAAGGGAGAATTGGAAGATGGGACTAAAATAGCAGTTAAACGGATGGAAGCTGGCGTGATTAGTAGCAAAGCCTTGGACGAATTCCAGGCTGAAATTGCAGTTTTATCAAAAGTCCGACACCGCCATCTTGTGTCGCTATTGGGTTATTCCATTCAAGGCAATGAGAGACTTCTAGTTTATGAATACATGCCACAAGGGGCTCTCAGTAAGCATCTTTTCCACTGGAAGAAGCTACAACTGGAGCCCCTCTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATAGTATGGCTCACCAGAGTTTCATTCACAGAGATCTTAAGTCATCAAATATTCTGCTTGGGGATGATTTTAAAGCAAAAGTCTCAGATTTTGGGCTGGTTAAACTTGCTCCTGATGGAGAAAAATCTGTGGTGACCCGACTTGCTGGAACTTTTGGATACTTGGCACCAGAATATGCAGtGACAGGAAAAATCACTACCAAGGCAGATGTTTTTAGTTTCGGGGTTGTCCTAATGGAGCTACTGACAGGAATGATGGCACTTGATGAGGATAGACCTGAGGAAAGCCAATACTTGGCAGCGTGGTTCTGGCATATAAAATCAAACAAGGAGAAACTCATGGCTGCTATTGACCCAGCTCTAAACATAAAGGAAGAGACATTTGAGAACATCTCTGTGATTGCGGAGTTAGCTGGGCATTGCACTGCAAGAGATCCAAACCAACGGCCAGATATGGGGCATGCTGTGAATGTTCTGTCCCCACTTGTTGAGAAATGGAAACCATTTGATGATGATGCTGGGGAATACTCTGGCATTGACTATAGCCTTCCCCTTAATCAGATGGTGAAGGACTGGCAGGAAGCTGAAGGAAAGGACCTCAGCTATGTGGACTTGGAAGACAGTAAGGGTAGTATCCCCGCAAGGCCTACTGGGTTTGCGGACTCTTTTACTTCTTCTGATGGCCGCTGA 2646 0.4429 MEVCRFKLVSVLVLSLAAVVFCVTDPNDVKILNDFRKGLDNPELLPWPEDGGDPCGSPSWKYIYCKGSRVSQIQAKNLNLSGPLPQNFNQLSMLSNIGLQNNRLNGPLPSFSGLAQLKYAYLDYNAFDSIPADFFDGLVSLEVMALDHNNLNASTGWQFPSHLQDSTQLTNLSCMSCNLAGPLPSFLGNFSSLSVLKLSDNSLTGEIPSTFTGKTLQVLWLNNQRGGGLTGSIDVVATMTSLISLWLHGNQFTGTIPANIGDLTLLKDLNLNGNQLVGLIPEALVDSWTGNNPCEGPWLGMKCDANGKVTMINLPNFNLNGTLSPRVANMSSLVAIRLAGNHLTGVIPNEWTSLKSLTLLDISGNNISPPLPNFSSNLKLLTNGNPLLNGSPEAPSSGNAEPPPNTPSSPTHSSSNSNNTLESHHSKRKNLVVIVAPIAGIAAAAFLLIPLSIYCFKRRRENVEAPNSLVIHPRDPSYSDNMIKIAVANTNGSTSTITGSGSGSINSSGVRDSHVIEAGNLVISVQVLRNVTNNFASENELGRGGFGVVYKGELEDGTKIAVKRMEAGVISSKALDEFQAEIAVLSKVRHRHLVSLLGYSIQGNERLLVYEYMPQGALSKHLFHWKKLQLEPLSWKRRLNIALDVARGMEYLHSMAHQSFIHRDLKSSNILLGDDFKAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGMMALDEDRPEESQYLAAWFWHIKSNKEKLMAAIDPALNIKEETFENISVIAELAGHCTARDPNQRPDMGHAVNVLSPLVEKWKPFDDDAGEYSGIDYSLPLNQMVKDWQEAEGKDLSYVDLEDSKGSIPARPTGFADSFTSSDGR 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3002 881 Gene3D Phosphorylase Kinase; domain 1 498 612 - -
Sto13g3002 881 SUPERFAMILY L domain-like 22 285 - -
Sto13g3002 881 PANTHER OSJNBA0070M12.3 PROTEIN 281 881 - -
Sto13g3002 881 PANTHER OSJNBA0070M12.3 PROTEIN 1 285 - -
Sto13g3002 881 SMART LRR_typ_2 138 161 IPR003591 -
Sto13g3002 881 SMART LRR_typ_2 239 262 IPR003591 -
Sto13g3002 881 SMART LRR_typ_2 190 213 IPR003591 -
Sto13g3002 881 SMART LRR_typ_2 114 137 IPR003591 -
Sto13g3002 881 SMART LRR_typ_2 354 378 IPR003591 -
Sto13g3002 881 SMART LRR_typ_2 330 353 IPR003591 -
Sto13g3002 881 SMART LRR_typ_2 263 286 IPR003591 -
Sto13g3002 881 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 1 285 - -
Sto13g3002 881 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 281 881 - -
Sto13g3002 881 ProSiteProfiles Protein kinase domain profile. 535 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3002 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Sto13g3002 881 SUPERFAMILY Protein kinase-like (PK-like) 513 811 IPR011009 -
Sto13g3002 881 MobiDBLite consensus disorder prediction 385 424 - -
Sto13g3002 881 ProSitePatterns Protein kinases ATP-binding region signature. 541 563 IPR017441 GO:0005524
Sto13g3002 881 Gene3D Ribonuclease Inhibitor 25 284 IPR032675 -
Sto13g3002 881 Pfam Protein tyrosine and serine/threonine kinase 538 809 IPR001245 GO:0004672|GO:0006468
Sto13g3002 881 CDD STKc_IRAK 541 814 - -
Sto13g3002 881 Gene3D Ribonuclease Inhibitor 285 391 IPR032675 -
Sto13g3002 881 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Sto13g3002 881 Pfam Leucine rich repeat N-terminal domain 285 304 IPR013210 -
Sto13g3002 881 SUPERFAMILY L domain-like 284 382 - -
Sto13g3002 881 MobiDBLite consensus disorder prediction 859 881 - -
Sto13g3002 881 Gene3D Transferase(Phosphotransferase) domain 1 613 827 - -
Sto13g3002 881 SMART serkin_6 535 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3002 Sto-Chr13 34854978 34858372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3002 79 816 Receptor kinase-like Gene Family AT5G07280 32.203 8.72e-81 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Sto13g3002 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3002 - - zju:107433627 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1128 8 7148407 7151783 Sto13g3002 13 34854978 34858372 CCT
Sto13g3002 13 34854978 34858372 Sto13g3002 13 34854978 34858372 ECH