Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2997 ATGGCGACGTACTTCCATGGTAATTCGGAAATCCAAACACAAGCACCCGATGGCCTCCAAACTCTGGTGCTCATGAACCCCGCCTACATCCACTACTCCGACACGCCGCACCACCACAACCCCAGCAACCTCCTCTTACTCAATTCCATCGCAGCTGCCAACAACAACTCCCACTCCCTCACTTCCCAAGCCCTTCCCCACGCGCTACCCACTCACACCCAGCAATTCGTGGGCGTCCCGGCTTCCCATCACGACGTCTCCGCCCTGCATGGACGCATGCACTACAATCTCTGGGACCCAAACGCGGCGGCGCGTGAGACACCACGCGCCTCTCAGCAGGGTCTATCCTTAAGCCTGTCGTCGCAGCAAGGGGGAATGGGGTGTGGGTTCCGGGTGGAGCGTGAGGTGGCATCATCAGAGGGGGAAGAGGTGGGGGTGTCGGGGGGGATGCAGAGTGTGGTTGTGAGCTCCAAGTACTTGAAGGCAGCCCAGGAGGTTCTAGAGGAAGCCGTGAATGTGAACAACGGCATCAAAACAGAATTGGGAAACAAGAGTACTCATAGTGATACTAATAAGCCCATTCATGGAGAGTGTTCAGGAACAGCACCCAGTGGCGACGCTGCAGAATCAAACGCTAAGCCTCCCTCTGACCTATCACCAGCCGAGAGACAAGAAATTCAGATGAAGAAGGCCAAGCTAATCACCATGCTCGATgagGTGGAGCAGAGGTACAGACAGTACCGGCAGCAGATGCAGATAGTGATATCCTCATTTGAGGAAGCTGCGGGAATTGGGGCAGCCAGAACATACACTGCTCTTGCACTCAAAACAATCTCGAAGCAGTTTCGTTGCTTGAAGGATGCCATCACTGCCCAAATTCGAGGTGCTAATAAGAGTTTAGGAGAAGAAGATTGCTTGGCGCCCAAAATAGAAGGTTCCAGACTCAAATACGTGGACCACCAACTCCGTCAACAGAGAGCTCTTCAACACTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAACGTTCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCAGATAAACACATGCTTGCCAAACAAACAGGCCTCACCAGGAGCCAGGTTTCCAATTGGTTCATAAATGCTCGAGTTCGGCTGTGGAAACCAATGGTGGAAGAAATGTACATGGAGGAGATGAAGGAGCAAGAACAGAATGGGAGTGAAGACAAATCAAACAAGACCACCGAAGACGCCGCAACCAAAACTGCCGCCCCACAAAAGAGATCCTCTGCCGCTACTTCACAAACTGACAACgccaaaaccctcaatttcaaACAAGACAACAACGCTCCAACAGTTTCCGTAATATCATCATCGCCACCTGCAGCTGCGGCTAATGTCAGAAACCAGTTTGGGTTCAGCTTCATGGGGTCATCGGAGTTAGAAGGGATCACACAAGCCAGTCCCAAGAAACCAAGGAACCATGAAATTCTGCATTCTCCAACTTCCATTAATATGGATGTGAAGCCCAACAATGAGGGAAACATTAACAACGAGCAGATGTCTGTGAAATTTGGAGATGAAAGGCAGGGGAGGGATGGCTATTCTTTCATGGAAACCCAAACAAACTTCATGGGAGGTTTTGGACAATACCCAATTGGGGAAATTGGGAGGTTTGATGCACAACAATTCACTCCAAGGTTTTCAGGTAATGGGGTTTCTTTGACTCTTGGTCTTCCTCACTGTGACACATTATCAGGAACCCATCAAACGTTTCTGCCAAACCACAACATTCAACTAGGACGAAGATTGGAGATGGGTGAAGCAAACGAGTTCGGAGGCTTAAACCCTTCAACTCCTCACTCTTCAGCTGCTGCATTTGAGAACATGAATATGCAAAACCCCAAAAGAATGATAGAAACAAAAGTGGATTCAAGGGATTGCCACATTTCACCATCCAATTTGAGCGCCACAGCATTCTCACCATTCATTGTCACAGAATCGATAATAGGTTTTGTAACCCTCACAAACGGGAGCCACAACTTCACAACCTCAAGGCGTTTAGCAGTTGGCAATATTACAGTTCCATACCCAACCGCCTCTAAAACCTTTGATGTCACCTCTATAGCTCGCAACTTTATCTCAATGATTTCAGTTGTTGCAATCTCTAGCTCAAATTTAAGATCATTCAATGatggtggtggggatgatgtAGCAAAGCGCAAGGCTGACACAAAGATGCTTATGATTGCTGACTGGTCGACTGGTTGA 2301 0.4802 MATYFHGNSEIQTQAPDGLQTLVLMNPAYIHYSDTPHHHNPSNLLLLNSIAAANNNSHSLTSQALPHALPTHTQQFVGVPASHHDVSALHGRMHYNLWDPNAAARETPRASQQGLSLSLSSQQGGMGCGFRVEREVASSEGEEVGVSGGMQSVVVSSKYLKAAQEVLEEAVNVNNGIKTELGNKSTHSDTNKPIHGECSGTAPSGDAAESNAKPPSDLSPAERQEIQMKKAKLITMLDEVEQRYRQYRQQMQIVISSFEEAAGIGAARTYTALALKTISKQFRCLKDAITAQIRGANKSLGEEDCLAPKIEGSRLKYVDHQLRQQRALQHLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQEQNGSEDKSNKTTEDAATKTAAPQKRSSAATSQTDNAKTLNFKQDNNAPTVSVISSSPPAAAANVRNQFGFSFMGSSELEGITQASPKKPRNHEILHSPTSINMDVKPNNEGNINNEQMSVKFGDERQGRDGYSFMETQTNFMGGFGQYPIGEIGRFDAQQFTPRFSGNGVSLTLGLPHCDTLSGTHQTFLPNHNIQLGRRLEMGEANEFGGLNPSTPHSSAAAFENMNMQNPKRMIETKVDSRDCHISPSNLSATAFSPFIVTESIIGFVTLTNGSHNFTTSRRLAVGNITVPYPTASKTFDVTSIARNFISMISVVAISSSNLRSFNDGGGDDVAKRKADTKMLMIADWSTG 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2997 766 MobiDBLite consensus disorder prediction 427 463 - -
Sto13g2997 766 SUPERFAMILY Homeodomain-like 340 406 IPR009057 -
Sto13g2997 766 MobiDBLite consensus disorder prediction 179 197 - -
Sto13g2997 766 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 609 - -
Sto13g2997 766 MobiDBLite consensus disorder prediction 179 222 - -
Sto13g2997 766 ProSiteProfiles 'Homeobox' domain profile. 336 399 IPR001356 GO:0003677
Sto13g2997 766 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 609 - -
Sto13g2997 766 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677|GO:0006355
Sto13g2997 766 Coils Coil 160 180 - -
Sto13g2997 766 CDD homeodomain 339 399 IPR001356 GO:0003677
Sto13g2997 766 Pfam Associated with HOX 153 290 IPR006563 -
Sto13g2997 766 SMART prehox3 147 291 IPR006563 -
Sto13g2997 766 MobiDBLite consensus disorder prediction 409 463 - -
Sto13g2997 766 Coils Coil 223 257 - -
Sto13g2997 766 Gene3D - 342 422 - -
Sto13g2997 766 SMART HOX_1 339 403 IPR001356 GO:0003677
Sto13g2997 766 MobiDBLite consensus disorder prediction 409 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2997 Sto-Chr13 34807290 34811708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2997 1 649 Homeobox Transcription Factor Family AT2G35940 48.352 1.43e-163 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sto13g2997 POX 6.4e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2997 - - qsu:112031679 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1135 8 7203981 7206247 Sto13g2997 13 34807290 34811708 CCT
Sto13g2997 13 34807290 34811708 Sto13g2997 13 34807290 34811708 ECH