Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2992 ATGGCCATGCAAACTGTTTGTTTCAAAGAACATGAAGGAATTGTCCACAATTCTGTTGGACAATTGTCATCTGTAACTTCAGCCCCTTGGTGGAGTGCCTTTGGACCTCAATCGGTTCGCGACGAGTCTTGTACCCAAATCAAACCTTTTTCATTGGAACTTCCCAACTGTGCTGCCACAAAGCAAACAGGAAGAGGAGCTCAACAAGTGTTGGATAAAGGACATACAACTCAGTTCACTATCTTTCCAAATGATTGCAAAATGTCAGATCATGCACAAAAGCATCAGCCAACCATGTCACTTCAGTCATCACTTCCTGATCCTCGTGGTCATTTTGAGCTAAAATTTAGTCAGCCTATGATCTGTTCAAAATATGCTTATATGGATCAATTTTATGGGCTCATCTCAACTTATGGACCTCAAATTTCGGGCCGTATAATGCTGCCACATACCATGACATCCGATGATGGTCCAATTTATGTAAATGCTAAGCAGTACCATGGAATCATCAGACGTCGGCAGTCCCGTGCAAAGGCTGTACTGGAACAGAAATTGGCCAAACGTAGCAAGCCTTATATGCATGAATCACGCCACCTCCATGCGATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACaccaaaaaattgaaaaatggaaATGGTGAAAGTGGAAGTGCAGTGAAAAAAATTGGTGAGAGACTATTTCAGCCTAGTGGCTCTCACTCTCAGAGTTCTGAAGTTCTGCAATCCGAGGGTGGAACTCTAAGTTCTTCAAAGGAAATCAATGGAAGCAGTCCAAATGTTTCTGGGTCAGAGGTGACCAGTATGTATTCACAGGGAAGTCTCAGTAACTTCTCTCTCAGTCATCTGGGATCTTCTTCTGTCCACTCTCTTGCAGACATGATGGATAGTGGTCATGGCATTGTCATGCCCACAAAATGGAACTCCATTGCAGATGAAGCTTGCTCCAACATCTGGTTGGCAAATCATCCTTGGCTCATTCTATATATGTACTATAGTAGTACTACTGTCTCTGTCTTTCTGAACAGGGCTGTCTTGGTTTGGGAGAACTATAATCAATATGATAATGAGGAGCAGTATAATTGCAATACAGGTCCATTTCCGGGTGTTCTTCTGGTGCTTCCTCGCAACCTGCAACTGCTGCACCCCACCTCTGACGTACGAATCAGCTCTGGCCACGTGGCTCTCTATATCATCCAATTGTTCCCCTTGGGATTGCACCAACACTGCCATGTCCAAAAACACCTGGTGCAGCTCATTCAGAttcctctctatctctttcaccGCGTCATGCCTCTCTTGAATCTCATGGATCGTGTCCATTACGCTCGCTCTCCCTTGCTctTGCTTACCGGTAGAGATGAGGAGGTCAATGGTTTTATCGTCGGGATTCTCGCCGGTGACAGTATAGTACCTGCGTTGTACGGTCTCCCTGTACTCGGAGGATATTTGTTGCCTCAGATTGTTGAAGCTTTCCATGGAATCTTTCAGCTTCTTTCTCAACCCGTTGACTACGGAGCGATCGAGCGCCTCGAGTCGGAGCTTGATGAGCTTGGCCTTCTTGAGAGCGAGTGCGACGTCGGCGTCCATGCGAGAGCGAAGGTCCTTCACGGCCTTGGCGTTGTGAAGGCTCTTGCTCTGCTCGTGAGAGCTACGGAGGCTCTGGTTGAGGCTTTCCAGCTCCTTGAGCTCATTCTTGAGCGACTCCACCTCCTGGAAGAACTTGTCGAGGTTGACGCCGCCGGTGGTCAATTCCGTCATCTGGATGACGTGGTGGGGGTTGTCCGGCGAGATTTGCTCGTTGCGGGAGCGGGAGCGGGAGAAGGTGGAGGACAACAAGTCGTTCATGGTGGCGATTTAGGGGAAACAGAGGATAGAGAAGAAgggattaggattaggatttggaTTTGGAGGAGGAATTCTTGA 1953 0.4624 MAMQTVCFKEHEGIVHNSVGQLSSVTSAPWWSAFGPQSVRDESCTQIKPFSLELPNCAATKQTGRGAQQVLDKGHTTQFTIFPNDCKMSDHAQKHQPTMSLQSSLPDPRGHFELKFSQPMICSKYAYMDQFYGLISTYGPQISGRIMLPHTMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLEQKLAKRSKPYMHESRHLHAMRRPRGCGGRFLNTKKLKNGNGESGSAVKKIGERLFQPSGSHSQSSEVLQSEGGTLSSSKEINGSSPNVSGSEVTSMYSQGSLSNFSLSHLGSSSVHSLADMMDSGHGIVMPTKWNSIADEACSNIWLANHPWLILYMYYSSTTVSVFLNRAVLVWENYNQYDNEEQYNCNTGPFPGVLLVLPRNLQLLHPTSDVRISSGHVALYIIQLFPLGLHQHCHVQKHLVQLIQIPLYLFHRVMPLLNLMDRVHYARSPLLLLTGRDEEVNGFIVGILAGDSIVPALYGLPVLGGYLLPQIVEAFHGIFQLLSQPVDYGAIERLESELDELGLLESECDVGVHARAKVLHGLGVVKALALLVRATEALVEAFQLLELILERLHLLEELVEVDAAGGQFRHLDDVVGVVRRDLLVAGAGAGEGGGQQVVHGGDLGETEDREEGIRIRIWIWRRNS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2992 650 PRINTS CCAAT-binding transcription factor subunit B signature 158 180 IPR001289 GO:0003700|GO:0006355
Sto13g2992 650 PRINTS CCAAT-binding transcription factor subunit B signature 189 212 IPR001289 GO:0003700|GO:0006355
Sto13g2992 650 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 327 IPR001289 GO:0003700|GO:0006355
Sto13g2992 650 MobiDBLite consensus disorder prediction 238 277 - -
Sto13g2992 650 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 158 212 IPR001289 GO:0003700|GO:0006355
Sto13g2992 650 Gene3D - 156 216 - -
Sto13g2992 650 ProSiteProfiles NF-YA/HAP2 family profile. 155 215 IPR001289 GO:0003700|GO:0006355
Sto13g2992 650 SMART cbf3 154 215 IPR001289 GO:0003700|GO:0006355
Sto13g2992 650 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 327 - -
Sto13g2992 650 MobiDBLite consensus disorder prediction 189 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2992 Sto-Chr13 34746805 34752965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2992 1 327 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.149 1.60e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sto13g2992 CBFB_NFYA 4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2992 K08064 - gmx:100527677 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2992 13 34746805 34752965 Sto13g2992 13 34746805 34752965 ECH