Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2991 ATGAGCAACAACAGCACAGGCGATTCGTCTGGATTCCTGGGATCCAACAACATAAGTGGGTTTGGGTATGGCATAGGAATATCAAGTGGGATTCTGCTGCTCATCACAACTATCACCCTCACATCCTATTTCTGCGCCAGAACATCATCCACTCGCTCTGCCTCTGCTCACACAAATATTAATATTGCGCCAACGTTAATCCTTGAGCCACAGCACGCGGTGGTGGATGTGGGGCTAGATGAAGCCACCATTCTGAGCTACCCCAAGCTCTTGTATTCGGAGGCCAAGCTCAACAAGTCTGATTCCACACCTACCTGCTGTTCCATATGCTTGGGAGATTATAAAGCTAAGGATATGCTTCGCCTTTTACCTGATTGTGGACATATGTTCCATCTCAAGTGCATTGACCCATGGCTCAGGTTGCATCCAACATGTCCTCTCTGCAGAACCTCGCCTGTTCCAACGCCACTCTCCACGCCTCTCGCTGAGGTCGTTCCCTTGGCTGCCATGCGAATATCCTAA 522 0.4962 MSNNSTGDSSGFLGSNNISGFGYGIGISSGILLLITTITLTSYFCARTSSTRSASAHTNINIAPTLILEPQHAVVDVGLDEATILSYPKLLYSEAKLNKSDSTPTCCSICLGDYKAKDMLRLLPDCGHMFHLKCIDPWLRLHPTCPLCRTSPVPTPLSTPLAEVVPLAAMRIS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2991 173 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Sto13g2991 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Sto13g2991 173 SMART ring_2 107 148 IPR001841 -
Sto13g2991 173 Pfam Ring finger domain 107 149 IPR001841 -
Sto13g2991 173 SUPERFAMILY RING/U-box 89 154 - -
Sto13g2991 173 CDD RING-H2_PA-TM-RING 106 149 - -
Sto13g2991 173 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 6 170 - -
Sto13g2991 173 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 170 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2991 Sto-Chr13 34734202 34734723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2991 8 169 C3H Transcription Factor Family AT2G35910 61.111 1.27e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2991 - - gmx:100811799 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1149 8 7307508 7308005 Sto13g2991 13 34734202 34734723 CCT