Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2972 ATGCTTGGCTTCAAGAGCTTCTTGTCTCGTACcagaagaataaagaaaaagagcaGAAACAAGCGCAAACTCATAAGTCAATTTGCTTTCGGCGAGCAAAATTGCATTTCCCACAAAAATGAATTACCTGACCGAGAAGAAGTAATAGAAGATACTGAAGAAGGTTTCGGGCTCAAAAGCTCTGCCCCATCACACACATATGGAGTTCAACCTCTGGGAAATCTTTATTTCAACCCAGGTTCTATCAACTCCCGAGACACAGGTTTAGGTAATCTCCACACCCTGTCAGATGAACTTGTTCTTGAAATTCTGGGGTTGTTGGATGCCACCAACTTGGGGGTTTTGGCAACTGTGAGCAAGTCTTTTTATGTTTTCACTAACCAAGAACCCATTTGGAGGAACCTTGTATTAGAAAATCTTTGTGATGGGTTTCGATACAATGGGTCTTGGAAATCTACTTACATTGGTGCTTACTACCCTTCATTTGATATCTCAAATATTACTGTTCAGCATTTGAAAGTGAGAGACTTCTATTCTGATTATCTTTTCCAAAGTTGGCTCTGTGCTAATCTTGAAATGAAACCTGAGTGGTTGGTAAGAGATAATATAGTTAGAAAGAAGGGCATTTCAGTTGAAGAATTTGTAAAGAATTTTGAGGAGCCTAATAAGCCGGTGTTGTTGGAAGGATGTCTTGATAATTGGGATGCATTGAAAAATTGGGATAGAGATTATTTGGTTCAACTGTGTGgtgatattaagttttcagttGGACCAGTGGAAATGAGGCTTGAAGACTATTTTGGGTACTCAGAtcaagtgagagaagaaagaCCATTGTATTTGTTTGATCCAAAATTTGCTGAAAAAGTTCCCAATTTGGGTTCACAATATGAAGTTCCAGCCTACTTCCAGGAGGACCTGTTTGGTGTGTTGGGCGAAGAGAGACCTGATTATAGATGGATTATTATTGGACCAGCTGGATCTGGATCATCTTTCCATGTTGACCCGAATTCAACTTCAGCTTGGAATGCAGTAATTAAGGGCTCCAAGAAGTGGGTATTATTTCCCCCTGATGTGATTCCACCTGGAGTTCATCCTAGCCCTGATGGTGCAGAGGTTGCATCACCTGTTTCAATAATTGAGTGGTTCATGAACTTTTATGGCGAAACAAAAAGTTGGAAAAAGAAACCTATTGAGTGTATCTGTAAAGCTGGGGAGGTTGTCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAGTCCATAGCCATAACTCAAAATTATGCCAGTAGGAGAAACTTGCTAAATGTCCTGGATTTTCTTAAGAGGCCAAATGCGAGCATACTGGTGTCTGGAACAAGAGATCGGGTGAATTTGTATGAGAAGTTTAAAAATGCTGTCGAGGATTCTTTTCCTGGAATAATTGATGAACTGAcccaaaaagaagagaaaaagatccAGCAGAAGAAACTTTCCTTCTGGGATTCTGTGACAGATTCCAAAGTAGGAGCTTTTAAGTTCTCTTTCTAG 1539 0.3834 MLGFKSFLSRTRRIKKKSRNKRKLISQFAFGEQNCISHKNELPDREEVIEDTEEGFGLKSSAPSHTYGVQPLGNLYFNPGSINSRDTGLGNLHTLSDELVLEILGLLDATNLGVLATVSKSFYVFTNQEPIWRNLVLENLCDGFRYNGSWKSTYIGAYYPSFDISNITVQHLKVRDFYSDYLFQSWLCANLEMKPEWLVRDNIVRKKGISVEEFVKNFEEPNKPVLLEGCLDNWDALKNWDRDYLVQLCGDIKFSVGPVEMRLEDYFGYSDQVREERPLYLFDPKFAEKVPNLGSQYEVPAYFQEDLFGVLGEERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWVLFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGETKSWKKKPIECICKAGEVVFVPNGWWHLVINLEESIAITQNYASRRNLLNVLDFLKRPNASILVSGTRDRVNLYEKFKNAVEDSFPGIIDELTQKEEKKIQQKKLSFWDSVTDSKVGAFKFSF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2972 512 SMART cupin_9 279 448 IPR003347 -
Sto13g2972 512 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 58 510 - -
Sto13g2972 512 ProSiteProfiles F-box domain profile. 89 135 IPR001810 GO:0005515
Sto13g2972 512 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 58 510 - -
Sto13g2972 512 Gene3D Cupin 182 433 - -
Sto13g2972 512 Pfam Cupin-like domain 212 432 IPR041667 -
Sto13g2972 512 Gene3D - 85 161 - -
Sto13g2972 512 ProSiteProfiles JmjC domain profile. 288 448 IPR003347 -
Sto13g2972 512 SUPERFAMILY F-box domain 87 156 IPR036047 GO:0005515
Sto13g2972 512 SMART fbox_2 95 135 IPR001810 GO:0005515
Sto13g2972 512 SUPERFAMILY Clavaminate synthase-like 203 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2972 Sto-Chr13 34632659 34634526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2972 80 437 Glycosyltransferase AT1G78280 36.729 1.40e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sto13g2972 Cupin_8 1.9e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2972 - - lja:Lj1g3v4753250.1 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2972 13 34632659 34634526 Sto13g2972 13 34632659 34634526 ECH