Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2961 ATGGCTTCAAGATTCTGGACCCAGGGCGGTAGTGACTCCGAGGAGGAGGAGAGTGATCACTCTGAGGAAGTTGACAATGTAGTGGGTGATTCTGCCAATCAAGCTGTTAAGAGCAGATACTTGCAGGGTAATGCCAGTGATAGTGATGACTCTGATGGCCAAAAGAGGGTTGTTAGATCTGCAAAAGACAAACGCTTTGAAGAGATGTCATCTACTATTGATCAGATGAAGAATGCTATGAAGATTAATGACTGGGTGAGCTTGCAAGAGAGCTTTGATAAGATAAACAAACAACTTGAGAAAGTCATGCGTGTCACTGAATCTGAGAAGGTCCCTACTCTTTACATCAAGGCACTTGTGATGTTGGAAGAGTTCTTGGCTCAGGCTTTGGCAAATAAGGATGCCAAAAAGAAGATGAGTAGTAGCAATGCTAAAGCTTTGAACTCAATGAAGcagaaattgaagaagaatAATAAGCAATATGAGGATTTGATTAATAAATATAGAGAAAATCCTGAGAGTGAggaggagaaagaagaagaagaatctgAAGATGAGTATGAAAGCGAGGAGGAGGTAATTGAGGAGCTTGATAAGATGCAAAAGTCAGATTCTGAGGATGGTGATCAAGAAGATGAGAGGTCAGATGCAATTGATGCGCCTTGGGACCAAAAACTTAATAGGAAGGACAGACTTATGGATAGGCAATTTATGAAAGATCCTAGTGAGATCTCATGGGATATGGTTAACAAGAAGTTTAAAGAAGTTGTGGCAGCAAGGGGCAGGCGAGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTCACCTTCTTAACCAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATATTTTTTAGTGTTGTTTCTGCGCAGTTTGATGTCAATCCAGGTTTAAATGGGCATATGCCTATAAATGTGTGGAAGAAATGCGTACAGAACATGCTAGTCATTCTTGATATTTTAGTGCAGTATCCTAACATAGTTGTCGATGATACAGTGGAGCCTGATGAGAATGAAACTCAGAAAGGGCCTGACCATAATGGACCAATTCGGGTATGGGGGAACCTAGTAGCATTCCTGGAAAGAATAGATGCTGAGTTTTTCAAGAGCTTGCAATGCATTGATCCTCACACCCGTGAGTATGTTGAGAGACTTAGGGATGAACCCATGTTTCTGGCTCTTGCTCAGAATGTCCAGGACTATCTTGAAAGGGTTGGAGATTTCAAAGCTTCTTCCAAGGTAGCCCTTAAACGGGTTGAACTCGTTTATTACAAACCACAAGAGGTTTATGATGCTATGAGAAAATTGGCTGAACTGACAGAAGATGGAGATAATGGTGAGGGAGATGAGGAGTCTAAAGGGTTTGAGGAAACAAGGATTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGCCTCGAAAACCCACCTTTCCAGAGAATAGCAGGACACTAATGGATTTATTGGTTTCCCTGATATACAAGTATGGTGATGAGCGTACTAAGGCTCGGGCAATGCTTTGTGATATATATCACCATGCTCTTCTGGATGAGTTCTCTACAGCTCGTGACCTGCTCCTTATGAGCCATTTGCAAGATAGTGTTCAGCATATGGACATATCAACACAGATCCTTTTTAACAGGGCTATGTCGCAGCTAGGTCTATGTGCTTTTCGAGTTGGACTGATTTCTGAAGCACATGGCTGCCTCTCTGAACTTTATTCTGGTGGAAGGGTGAAGGAGCTGCTTGCGCAGGGTGTCTCACAAAGCCGCTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGGAGGCGCCAGATGCCATATCACATGCACATAAACCTTGAGCTCTTGGAGTCGGTGCATCTTATATGTGCTATGCTGCTTGAAGTCCCTAACATGGCAGCCAATGTCCATGATGCAAAGCGCAAGGTCATTAGTAAGACTTTCCGTCGCCTTCTTGAGGTTAGTGAGAAGCAAACATTTACAGGTCCCCCTGAAAATGTTAGAGATCATGTCATGGCTGCTACACGGGCCCTTAGCAAGGGAGACTTCCATAAGACTTTTGACACTATCAAGTCTTTGGATGTCTGGAAATTTGTCAGAAATCGTGATAATGTGCTTGAAATGGTTAAGGAAAAAATCAAGGAGGAAGCACTAAGGACTTACCTTTTCACCTTCTCTTCATCCTATGATTCTTTGAGCATTGAGCAGCTCACTAAAATGTTCGACCTATCTGTTGCTCACACCCATAGCATTGTTAGTAGAATGATGATCAACGAGGAGCTGCATGCAAGCTGGGACCAGCCAAGTGGGTGTATTATTTTCCAGGATGTTGAGCACTCTAGATTGCAGGCTTTGGCGTTCCAGTTGACTGAGAAGTTATCTATCCTTGCAGAGAGTAATGAAAGAGCAATAGAAGCAAGGATAGGTGGCGGTGCTGCTGCCGCCACCAACACCACCACTGTAGGTGGTAGGTGGCAGGATCTGTCCCTTACTCAGACAAGGCAAGGCAGCGGTACTGGACGTGCAGGATATAGTATTGGTGGTGGAAGGCCAATGGCACTGAGTCAAAACACTGGGAGTGGATATTCAAGGGACCGAACGGGGAGAGGAACAGGTTCAGGGAGGACAACCCAGAGTGGTTCATTGAGGGGTGCCCAGGTGGATGCATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAA 2733 0.4369 MASRFWTQGGSDSEEEESDHSEEVDNVVGDSANQAVKSRYLQGNASDSDDSDGQKRVVRSAKDKRFEEMSSTIDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEEFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKYRENPESEEEKEEEESEDEYESEEEVIEELDKMQKSDSEDGDQEDERSDAIDAPWDQKLNRKDRLMDRQFMKDPSEISWDMVNKKFKEVVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEIFFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQYPNIVVDDTVEPDENETQKGPDHNGPIRVWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPMFLALAQNVQDYLERVGDFKASSKVALKRVELVYYKPQEVYDAMRKLAELTEDGDNGEGDEESKGFEETRIPTAFVVTPELVPRKPTFPENSRTLMDLLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLICAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRALSKGDFHKTFDTIKSLDVWKFVRNRDNVLEMVKEKIKEEALRTYLFTFSSSYDSLSIEQLTKMFDLSVAHTHSIVSRMMINEELHASWDQPSGCIIFQDVEHSRLQALAFQLTEKLSILAESNERAIEARIGGGAAAATNTTTVGGRWQDLSLTQTRQGSGTGRAGYSIGGGRPMALSQNTGSGYSRDRTGRGTGSGRTTQSGSLRGAQVDASTRMVSLKGVRA 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2961 910 Coils Coil 173 200 - -
Sto13g2961 910 MobiDBLite consensus disorder prediction 835 897 - -
Sto13g2961 910 Pfam PCI domain 656 784 IPR000717 -
Sto13g2961 910 MobiDBLite consensus disorder prediction 49 68 - -
Sto13g2961 910 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 909 - -
Sto13g2961 910 MobiDBLite consensus disorder prediction 27 48 - -
Sto13g2961 910 SMART PINT_4 717 805 IPR000717 -
Sto13g2961 910 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 886 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sto13g2961 910 MobiDBLite consensus disorder prediction 835 849 - -
Sto13g2961 910 MobiDBLite consensus disorder prediction 155 174 - -
Sto13g2961 910 MobiDBLite consensus disorder prediction 135 154 - -
Sto13g2961 910 MobiDBLite consensus disorder prediction 175 194 - -
Sto13g2961 910 MobiDBLite consensus disorder prediction 1 68 - -
Sto13g2961 910 Gene3D - 724 792 IPR036388 -
Sto13g2961 910 ProSiteProfiles PCI domain profile. 616 788 IPR000717 -
Sto13g2961 910 MobiDBLite consensus disorder prediction 860 897 - -
Sto13g2961 910 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 909 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sto13g2961 910 Coils Coil 144 171 - -
Sto13g2961 910 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 717 805 - -
Sto13g2961 910 MobiDBLite consensus disorder prediction 133 223 - -
Sto13g2961 910 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 46 648 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sto13g2961 910 SUPERFAMILY "Winged helix" DNA-binding domain 712 787 IPR036390 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2961 1 910 Eukaryotic Initiation Factors Gene Family AT3G56150 68.676 0.0 1208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2961 K03252 - gmx:100779751 1414.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2961 13 34563871 34567772 Sto13g2961 13 34563871 34567772 ECH