Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2951 ATGAGAACATCATGGGCGGATTCCGCCGACGGTTCAGTAAGTGCTTCTGATACTAAGGATTTAGCTCGCCCTTCCAGGTCAACATATGTTCCTCCACATCTTCGTAATAAGCCACCATCTTCAGAACCCACTTTAACACCATATCCATCTTCTTTATCAGCCAATGGTAGGGTAAATTATGGTGGCTATTCCTCTAAAGCTGATCATGGGAAGCCTGCATATGGCTCTAGTAGTCGAACTGCTAGTGGTTGGAACAATAATAGAGCTGGAGGGTGGGACCGTGGAAGGGAGCCGGAGGTGAATCCTTTTGGGGAAAATGATGAAGCAAAAGATCATGCTTTTGGTGATCAAGAAAACACAGGCATTAACTTTGATGCTTATGATGATATTCCTGTGGAGACTAGTGGGCAGAATGTGCCTCCGCCAGTAAATACATTTGCAGAAATAGACTTGGGTGAGGCATtgaatcaaaacataaaacggTGCAAGTATGTCAAACCAACTCCAGTTCAGAGGTATGCCATACCAATTTCTCGTGCTGGGCGAGATTTGATGGCTTGTGCTCAGACAGGGTCAGGCAAGACTGCCGCGTTTTGCTTTCCTATTATAAGTGGAATCATGAGGGAGCAGTGTGTTCAAAGGCCACGTGTAGCACGGATACATGATGAGGCCAAAAAGTTTTCCTACCAAACTGGTGTCAAGGTAGTAGTTGCTTACGGAGGAGCATCTATTAATCAACAGCTGCGGGAGCTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCAGGTCGATTGGTTGATTTGCTTGAGAGGGATAGGGTTTCCTTGCAGATGGTCAAATATCTGGCTCTTGATGAGGCTGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGGAAGATAGTTGAACAAATGGACATGCCTCCTCGAGGTGTGAGACAGACACTGTTGTTTAGTGCAACCTTTCCCAAAGAGATACAgAGACTTGCATCagattttctttcaaattatgtgtTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAGTATGTCCTCGAGTCTGACAAGAGAAGCCACCTTATGGACCTTCTTCACGCTCAGAGGGACAATGGAATTAATGGAAAGcaaagtttgacaTTAGTTTTCGTGGAAACAAAGAAAGGAGCCGATGCATTGGAACACTGGTTGTGTATCAATGGGTTTCCTGCATCTAGCATTCACGGCGACAGAACACAACCGgaaagagaactagcattGAGATCATTCAAGAGTGGAAACACGCCAATTTTAGTGGCAACAGATGTAGCAGCACGTGGTCTTGACATTCCACATGTGGCTCACGTGGTAAACTTTGATCTGCCAAATGACATTGACGATTATGTTCACCGGATTGGAAGAACAGGTCGAGCTGGTAAAATTGGATTAGCAACAGCATTTTTCAATGACAACAATTTGTCATTAGCTAGGCCCTTGGTTGATCTGATGCAAGAAGCAAATCAGGAGGTGCCTGCATGGCTTACAAGATATGCAGCAAGAGCTCCTTATGGAGGTGGCAACCGAAATAAGCGGTCCGGAGGAGGAGGAACACGTTTTGGTGGCCGTGATTTTAGGAAGGATAGCTCATTCCATAAAGGGACAGGAACAGAATATTATAGTGTAACTGGAGGTGGTGGATATGGGGTTCCTGCTAGTTATGGTGGAGGGTATGGTCATGGTGTAACAAGTGCTTGGGATTAG 1764 0.4376 MRTSWADSADGSVSASDTKDLARPSRSTYVPPHLRNKPPSSEPTLTPYPSSLSANGRVNYGGYSSKADHGKPAYGSSSRTASGWNNNRAGGWDRGREPEVNPFGENDEAKDHAFGDQENTGINFDAYDDIPVETSGQNVPPPVNTFAEIDLGEALNQNIKRCKYVKPTPVQRYAIPISRAGRDLMACAQTGSGKTAAFCFPIISGIMREQCVQRPRVARIHDEAKKFSYQTGVKVVVAYGGASINQQLRELERGVDILVATPGRLVDLLERDRVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRDNGINGKQSLTLVFVETKKGADALEHWLCINGFPASSIHGDRTQPERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKIGLATAFFNDNNLSLARPLVDLMQEANQEVPAWLTRYAARAPYGGGNRNKRSGGGGTRFGGRDFRKDSSFHKGTGTEYYSVTGGGGYGVPASYGGGYGHGVTSAWD 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2951 587 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 37 556 - -
Sto13g2951 587 Gene3D - 344 522 IPR027417 -
Sto13g2951 587 SMART ultradead3 163 356 IPR014001 -
Sto13g2951 587 Pfam DEAD/DEAH box helicase 168 330 IPR011545 GO:0003676|GO:0005524
Sto13g2951 587 Gene3D - 101 343 IPR027417 -
Sto13g2951 587 CDD SF2_C_DEAD 353 489 - -
Sto13g2951 587 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 556 - -
Sto13g2951 587 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Sto13g2951 587 Pfam Helicase conserved C-terminal domain 365 480 IPR001650 -
Sto13g2951 587 MobiDBLite consensus disorder prediction 1 23 - -
Sto13g2951 587 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 519 IPR001650 -
Sto13g2951 587 MobiDBLite consensus disorder prediction 1 141 - -
Sto13g2951 587 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 341 IPR014001 -
Sto13g2951 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 497 IPR027417 -
Sto13g2951 587 MobiDBLite consensus disorder prediction 525 547 - -
Sto13g2951 587 CDD DEADc_DDX3_DDX4 145 347 IPR044763 GO:0003724|GO:0005524
Sto13g2951 587 MobiDBLite consensus disorder prediction 92 115 - -
Sto13g2951 587 MobiDBLite consensus disorder prediction 46 60 - -
Sto13g2951 587 SMART helicmild6 399 480 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2951 Sto-Chr13 34481517 34484656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2951 142 512 Eukaryotic Initiation Factors Gene Family AT3G19760 30.628 6.66e-54 187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2951 13 34481517 34484656 Sto13g2951 13 34481517 34484656 ECH