Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2930 ATGGAGCTGGCGTTGAGTTTAGGAGATACGCCTAAAGGCTTGTCGATTAATCTGGACAAGGCCACCACCACCAGATTGGGCAACAAGGATCCATTCTTCATAGCACTAGGCGATGCGAATCACAGCAATGTAAATCGGTTGCCGGTGGGAGTGGAGGAGGCGGAGGATGGGACTCCGGTGTCGTCGTCTCCCAACAGCGTCTCCTCTTTTCAGATGGAGTTCTGCATCAGGAATAGTATGGTGGGGAGCAGAAACAAGAGAGAACATGAAGGTGAAGGCGAGAGAGACTGTTCCAGAGGCAGCGATGATGAAGACAACGGTTCCACTCGCAAGAAGCTCCGACTCTCCAAGGAACAATCGGCTTTTCTCGAGGAGAGCTTCAAGGAACATACTACTCTCAATCCTAAGCAGAAACTTGCTCTGGCCAAGCAGTTAAACCTCCGTCCTCGTCAAGTGGAAGTCTGGTTTCAGAACAGAAGGGCAAGGACAAAGCTGAAGCAGACGGAAGTAGATTGTGAATATCTGAAGAGATGTTGTGAGACACTGACAGAAGAGAACAGAAGGCTACAGAAGGAATTGCAAGAGCTAAGGGCTTTAAAGACGTCTCAGCCATTCTACATGCAGCTTCCAGCTACCACTCTTACCATGTGCCCCTCTTGCGAACGgTTGaatgagaaaattatactaTTTGGTGGTATCGACTATCGAAGATGCAGCcgtttgaaatttgaatgtcGTCTCAACAACTCCAATAACTGCGATTGA 765 0.4693 MELALSLGDTPKGLSINLDKATTTRLGNKDPFFIALGDANHSNVNRLPVGVEEAEDGTPVSSSPNSVSSFQMEFCIRNSMVGSRNKREHEGEGERDCSRGSDDEDNGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERLNEKIILFGGIDYRRCSRLKFECRLNNSNNCD 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2930 254 SUPERFAMILY Homeodomain-like 101 167 IPR009057 -
Sto13g2930 254 MobiDBLite consensus disorder prediction 81 115 - -
Sto13g2930 254 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Sto13g2930 254 PANTHER - 40 223 - -
Sto13g2930 254 CDD homeodomain 110 167 IPR001356 GO:0003677
Sto13g2930 254 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 40 223 - -
Sto13g2930 254 Gene3D - 114 164 - -
Sto13g2930 254 SMART HOX_1 108 170 IPR001356 GO:0003677
Sto13g2930 254 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Sto13g2930 254 MobiDBLite consensus disorder prediction 82 115 - -
Sto13g2930 254 Coils Coil 172 202 - -
Sto13g2930 254 Pfam Homeobox associated leucine zipper 166 200 IPR003106 GO:0006355|GO:0043565
Sto13g2930 254 SMART halz 166 209 IPR003106 GO:0006355|GO:0043565
Sto13g2930 254 Pfam Homeodomain 110 164 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2930 Sto-Chr13 34363746 34365461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2930 97 223 Homeobox Transcription Factor Family AT4G37790 80.000 5.02e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto13g2930 Homeodomain 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2930 K09338 - qsu:112028347 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1222 8 7722824 7724028 Sto13g2930 13 34363746 34365461 CCT
Sto13g2930 13 34363746 34365461 Sto13g2930 13 34363746 34365461 ECH