Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2926 ATGGGGGAAGAAGAGACGTCCAATGTAATAATGAATCTTGATTTGTATCTGGGTCCCGCTTCACAACCCCAAGCTAACTCTGAAGACACTGATCCTGTGATCTTAGTAGATAATCGGACTGAGCAGCCTCTTGGAAGATTTAGAGACGTAAGGCAGAGGGCTCGACAAGCATTGCGATGGAGGCAACCTCATGTTCATGCGCCACCTGAGGCCGCGATTGTTCCAATGGAATTAGACCAATTTGTGCCCACGCCTGGTATTGGAACTTCACAACAAGCTGGTCAGGCAAGTGTAGAAGCTGAGCCAAGAACAGAAGAGGTACCAAAAGCATGTGAAAACAACAATGGCATGGCAGACGATGAGGCATCAGAGAAGAATGATGATGTTGAAAATGCGAGTGGAAATGATGGGACCTTTTTTGATTGTAATATCTGTTTGGACCTATCCAAGGATCCTGTTGTGACTTGTTGTGGTCACTTGTTTTGTTGGTCTTGCCTCTATCGATGGCTTCATGTGCATTCAGAGGCTAGGGAATGCCCTGTTTGCAAAGGAGAGGTGACTTCGAATAATGTCACCCCAATATATGGTCGTGCAAACAATAATGTCCAAGATCCAGAGGAGGATCCCACTCTCCAAATCCCACTCAGGCCTCATGCAAGGCGTGTTGAGAATTTGAGGCAAACCATTGAGAGAACTCCATTAAGGTTCACTTTGGAGGGGGTGGTTATAAGTCTTACAGGAAGATATGATCATATAAGTCAGTACCATGACTTTGACAGTGTGCGTCAAATGGCAGAGACAACCTTGTCCTTGTTGAATGAGCTTCTGATATCTCGAGCAATTCGGAGAGAGCATAATCATGAGGCACCCCCAAATGGTGATACAGTGGAGGTAACACAAAACAACATGACTAGTCTTGATGCAGGGGAAGGTGAAAGCCGCAGGCCGCGAACCTTTTCACTTCAAATATCACAATCACCCAGAGACAGAGCAGCACTTTCTTCACTTCCCTCAACTGCGGATAGGGTAGATGAGACATATTTAAGTAGCCGTGCAGTGTCTAGAAGCCAAGAACAGAATCAACCGGTGGATGATAGAGATTCTTATTCAAGTGTTGCTGCTGTTATAAATTCTGAGAGTCAAGTTGACGCTGCCTTGGAAATTGATTCCATGGTATCATCGTCCAGGAGGAGAAACGATGCTTCTAGAGTTTCTGATGTAAATAGTGGAGATTCTCCTGCTCATAGGCGTAGGCGAAGACATGGTTTTGGTCTTTTGGAAGCTTCTGCGTCAGTCACCACTCACCTGCAATGCAGGTTACAGTTGGCCTTGGTCAGGGATTATGCCAATACCATTGATCGTTTCGTTTGTCGTCCTTAA 1380 0.4558 MGEEETSNVIMNLDLYLGPASQPQANSEDTDPVILVDNRTEQPLGRFRDVRQRARQALRWRQPHVHAPPEAAIVPMELDQFVPTPGIGTSQQAGQASVEAEPRTEEVPKACENNNGMADDEASEKNDDVENASGNDGTFFDCNICLDLSKDPVVTCCGHLFCWSCLYRWLHVHSEARECPVCKGEVTSNNVTPIYGRANNNVQDPEEDPTLQIPLRPHARRVENLRQTIERTPLRFTLEGVVISLTGRYDHISQYHDFDSVRQMAETTLSLLNELLISRAIRREHNHEAPPNGDTVEVTQNNMTSLDAGEGESRRPRTFSLQISQSPRDRAALSSLPSTADRVDETYLSSRAVSRSQEQNQPVDDRDSYSSVAAVINSESQVDAALEIDSMVSSSRRRNDASRVSDVNSGDSPAHRRRRRHGFGLLEASASVTTHLQCRLQLALVRDYANTIDRFVCRP 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2926 459 CDD RING-HC_AtRMA_like 140 184 - -
Sto13g2926 459 Pfam Zinc finger, C3HC4 type (RING finger) 142 182 - -
Sto13g2926 459 SMART ring_2 142 182 IPR001841 -
Sto13g2926 459 PANTHER OS01G0830200 PROTEIN 13 414 - -
Sto13g2926 459 MobiDBLite consensus disorder prediction 392 419 - -
Sto13g2926 459 MobiDBLite consensus disorder prediction 317 369 - -
Sto13g2926 459 SUPERFAMILY RING/U-box 138 195 - -
Sto13g2926 459 MobiDBLite consensus disorder prediction 306 369 - -
Sto13g2926 459 MobiDBLite consensus disorder prediction 84 98 - -
Sto13g2926 459 MobiDBLite consensus disorder prediction 84 130 - -
Sto13g2926 459 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Sto13g2926 459 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 414 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sto13g2926 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 210 IPR013083 -
Sto13g2926 459 ProSitePatterns Zinc finger RING-type signature. 157 166 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2926 Sto-Chr13 34351477 34353024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2926 1 412 C3H Transcription Factor Family AT3G58030 41.419 9.41e-88 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2926 K10666 - twl:119995011 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2926 13 34351477 34353024 Sto13g2926 13 34351477 34353024 ECH