Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2917 ATGGGAGggataaacaaaaacaaaaatgtgaGGAAAGTATGGGTGCGAGGTGGCAGCAATCAATACAGAATGGCTGACGGTGAGGATATTCAGCCTCTTGTTTGCGACAATGGAACGGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGGGCTGTATTCCCCAGCATTGTGGGTCGCCCTCGCCACACTGGTGTGATGGTTGGTATGGGACAAAAGGATGCCTATGTTGGGGATGAAGCTCAGTCGAAGAGAGGTATTTTGACTCTAAAATACCCAATCGAGCATGGTATCGTCAGCAATTGGGATGATATGGAAAAGATCTGGCATCACACTTTCTATAATGAGCTACGTGTAGCTCCAGAGGAGCATCCTGTTCTCCTCACAGAGGCACCCCTCAATCCCAAAGCCAATCGTGAGAAAATGACTCAAATTATGTTCGAGACCTTTAACACTCCAGCCATGTACGTCGCCATCCAGGCCGTCCTTTCTCTTTATGCTAGTGGCCGCACTACTGGTATTGTTCTGGACTCCGGGGATGGTGTGAGCCACACAGTTCCTATCTATGAAGGCTATGCCCTCCCACATGCAATCTTGCGTTTGGACCTTGCAGGGCGTGATCTCACTGATGCCTTGATGAAAATCTTGACTGAGCGTGGATACTCTTTCACCACTAGTGCTGAGCGTGAAATTGTAAGAGACGTGAAGGAAAAATTAGCCTATATTGCGCTGGATTATGAACAAGAGCTGGAAACAGCAAAGACCAGCTCAGCCGTTGAGAAGAGTTATGAACTACCTGATGGGCAGGTGATCACAATTGGTGCTGAAAGATTCCGCTGCCCTGAAGTACTCTTCCAACCATCCATGATCGGGATGGAAGCTGCTGGCATACATGAAACAACATATAACTCCATCATGAAGTGCGATGTTGACATTAGGAAGGATCTCTATGGTAACATTGTGTTGAGTGGTGGTTCCACTATGTTCCCAGGCATTGCTGATAGGATGAGCAAGGAGATCACAGCTTTGGCACCAAGTAGCATGAAAATCAAAGTGGTGGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTCTGGCATCCCTCAGTACCTTCCAACAGATGTGGATTGCAAAGGCAGAGTATGACGAATCTGGACCATCGATTGTTCACAGGAAGTGCTTCTAA 1203 0.4713 MGGINKNKNVRKVWVRGGSNQYRMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2917 400 Gene3D - 33 394 - -
Sto13g2917 400 SMART actin_3 30 400 IPR004000 -
Sto13g2917 400 SUPERFAMILY Actin-like ATPase domain 172 400 IPR043129 -
Sto13g2917 400 ProSitePatterns Actins signature 1. 78 88 IPR004001 -
Sto13g2917 400 PRINTS Actin signature 51 60 IPR004000 -
Sto13g2917 400 PRINTS Actin signature 74 85 IPR004000 -
Sto13g2917 400 PRINTS Actin signature 86 108 IPR004000 -
Sto13g2917 400 PRINTS Actin signature 140 153 IPR004000 -
Sto13g2917 400 PRINTS Actin signature 165 184 IPR004000 -
Sto13g2917 400 PRINTS Actin signature 261 277 IPR004000 -
Sto13g2917 400 PANTHER ACTIN 24 399 IPR004000 -
Sto13g2917 400 CDD NBD_sugar-kinase_HSP70_actin 33 206 - -
Sto13g2917 400 Gene3D Actin; Chain A, domain 4 205 296 - -
Sto13g2917 400 ProSitePatterns Actins and actin-related proteins signature. 129 141 IPR020902 -
Sto13g2917 400 Pfam Actin 28 400 IPR004000 -
Sto13g2917 400 SUPERFAMILY Actin-like ATPase domain 29 178 IPR043129 -
Sto13g2917 400 ProSitePatterns Actins signature 2. 381 389 IPR004001 -
Sto13g2917 400 PANTHER ACTIN 3 24 399 - -
Sto13g2917 400 Gene3D - 163 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2917 Sto-Chr13 34308855 34310941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2917 24 400 Cytoskeleton Gene Families AT3G12110 97.878 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2917 K10355 - tcc:18590701 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2917 13 34308855 34310941 Sto13g2917 13 34308855 34310941 ECH