Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2913 ATGGCGTCCAAAGGTCCGAGGTCTAAGATTGATCATGAGTCAAGAGCAAAGCGGCAAAAGGAAGAAGAGCAGCGATTAAGAAAAGTCGCACTAAATATTTCTAAGGATGTTAAGAAATTCTGGTTGAAAATAGAAAAGCTGGTTCTTTACAAGCATCAGAGGGAGcttgaagagaaaaagaaaaaggcacaGGACAAACAGCTTGAGTTTCTTTTGGGGCAAACTGAGAGGTACTCAACCATGTTGGCTGAAAATCTCGTGGATGCAATTAAACCAGTGGAAAAACAGTTGCCTGAGCAAAATAGGAGTACTCAATTCAGGGAAGTAGATGAAGACGTTTTCAACCAATCTAATGAAGTTAATGCTGTGATTTATCGTAAATGTTGGTACTGTTTCCAGGAGGATGATGAGCAAACCCTTGTGGAGGATGAGGCTCTTATAACTGAAGAAGAAAGACGAGAGGAGTTGGCAGCTTTGCATGATGAAATTGACCTTCCAATTGAGGAGTTACTGAAACGTTATTCTGGAGAGAAAGGATCAGTTACTGAAGAAAGTAGTCCACATCACAGTGAAGATGATAATAAGATAGTTAAAGCTGGTAATGGCAATGAAAATGGAGACGATCTTTTCTCTGTCAGCAAGATTAGCTCCTGTAACTCCAGCATGGCCCCTGGTCGTCGTTGTGATGAAAGTAATGGCGGCCAGTCTACACCTACAGATAATACCCGTCAATCTGAAAACTTAATACAAATTTCTAGTGAGAGGGCCACCAAAACTTTTGTATATGATTTTAATGACGAAGAGTACTCCAGTGATGATGAACGTGGGGAAGATGAATCTGGCAAAGCTTCTGCTGTATCGGAGGATCTTGTGGATTCTTCATTCCATGAAGATTCTAGAAAGAAGGATCCTGCTGTTTCTGTGGATGAGGATGTCAAGCCTGTTGAGCACCTGGATGTTTTACAGCCACAGGCAGAAGAACAAAATTGGGAGGCACCTCATGAAAACTCAGAAGGGAGGGAGAGTGAAAATCTAATTGCAGATGCAGCAGCAGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTCAAGTGCGCACAAAATTCCCTTTTCTGCTCAAGTATCCTCTACGTGAGTATCAACACATTGGATTGGATTGGCTTGTCACAATGTATGAAAAAAGACTGAATGGGATTTTGGCAGATGAAATGGGGCTTGGTAAGACAATTATGACTATAGCTTTGCTTGCACATCTTGCATGTGAAAGAGGGATTTGGGGCCCACATCTCATTGTGGTACCTACTAGTGTCATGCTTAACTGGGAAACTGAATTTCTCAAATGGTGTCCTGcctttaaaattttgacttatTTTGGAAGTGCAAAGGAACGAAAACTTAAAAGACAAGGATGGTTGAAACCAAACTCGTTTCATGTATGCATAACAACTTATAGGCTAGTTATTCAGGATTCTAAAGTTTTTAAGCGCAAGAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTGATTAAAAATTGGAAGTCGCAAAGGTGGCAGACACTCttaaatttcaattcaaaacgGCGTATTCTGTTGACTGGTACACCACTACAGAATGATCTTATGGAACTTTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCTCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCTGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAAGAGGTTGTTGATCGGTTGCATAATGTCCTTCGTCCTTTCATACTCCGTCGATTAAAGCAAGATGTGGAGAAGCAACTTCCGATGAAGCATGAGCATGTCATATATTGTAGACTGTCAAAAAGGCAGCGAAATTTGTATGAAGACTTCATTGCTAGTACAGAGACCCAAGTCACTCTTGCCAGTGCCAATTTTTTTGGGATGATCAGCATTATAATGCAACTTCGCAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTAGATATGTGGGGTATTGATGTTCAGCTAAGTTCTGCTGTATGTAAAATGTTCTCATCTAGTCCTTTTTCAATGGTAGATCTaagaggtttaggatttttatttACTCATCTTGATTATACCATGACTTCATGGGAGAGTGATGAGCTTAAAGCTATTGAGACCCCTGCAAGTTTAATAATGGAGCGTACTGATGCAAATGACCTTCAAGTAATTAGGCCTGAACCGAAGCATCAGAAAAAGGTCCCTGGAACTAATATCTTTGAGGAGATTCAGAGAGCAATTTGGGAAGAGAGGCTAAGAGAAGCAAAGGAACGTGCAGCTGCTATTGCATGGTGGAATTCCTTGAGGTGTAGAAAAAGGCCTATCTATTCAACAACCTTACGGGATCTTCTTACCATTAGGCATCCTGTATATGACATTCATCAGGTGAAGGCTAACCCTATTTCATACATGTACTCCTCAAAGCTAGCTGACATTGTGCTTTCTCCAGTTGAACGTTTCCAAAGGATGATTGATGTGGTTGAAAGTTTCATGTTTGCCATTCCAGCTGCACGAGCTCCATCTCCTGTTTGCTGGTGTAGTAGAAGTGAAGTGCCTGTGTTTCTTAATCCATCTTACAAGCAGAAATGTTCTGAAGTTTTGTCACCCCTTCTGTCACCAATCAGGCCTGCAATTGTCCGGCGGCAGGTGTATTTCCCAGATAGGCGTCTTATACAATTTGACTGTGGGAAATTGCAAGAGCTTGCAATTTTGTTGAGGAAATTAAAGTCAGAAGGTCACCGAGCTTTGATATTCACCCAGATGACTAAGATGCTTGACATATTGGAGGCTTTCATTAATTTGTATGGTTATACTTACATGCGATTGGATGGATCAACACAACCAGAGGAGAGGCAGACCTTAATGCAACGTTTTAACACAAACcccaaaatttttcttttcatcttgTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGATACAGTTATTTTCTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATAGGTGCCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATTGAAGAGAATATTTTGAAGAAAGCAAAGCAGAAGCGTGCACTTGATGATCTAGTTATACAAAGTGGGGGCTATAATACTGAATTTTTCAAGAAGCTGGATCCTATGGAATTATTTTCAGGTCATAGAACCCTTCCAGATAAAAACATGCAGAAGGAGAAAACCCAGACCAGTGGAGCTGAAGTTTCTGTAACTAATGCAGATGTGGAGGAAGCATTAAAATATGCTGAAGATGAAGCTGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCTGTGGAAAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAGGAGGATGAGTATGTGAACGAGGATGATATGAAAGTTGATGAGCCTGCAGAATTAGGTGAATCAGTTTCTAAGTTAAGTAAAGAGAATGCTTTAATGTTAGTTGGAAGTGAGCCTAAGGAAGAAAGAGCTCTCTCTGTAGCTGTcaaagatgatgatggtgacaTGCTGGCTGACGTCAAGCAGATGGCTGCAGCTGCAGCTGCTTCTGGACAAGCTATCTCAGCCTTTGAGAATCAGCTGCGTCCAATTGATCGATATGCCATTCGTTATCTGGAGGTGTGGGATCCAATTATAGATAAAGCGGCTTTGGAATCTGAAGTCAGGATTGAGGATACAGAATGGGAGTTAGATCGCATTGAGAAGTACAAAGAGGAGATGGAAGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCAACTGAGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAGCTCGAAAATGAGGCTAGGCAGAAAGAAGAGGCTGATGAAGAAAATTGTAATTCTGGAAAGACTCAAGCAGCTAGGGATTCTAAGCCCAAACCTAAAAAGAAAcccaagaaaaccaagtttaaATCCCTGAAGAAAGGATCTTTAGCCTCTGAATCGAGACCTATGAAAGAAGAGCTACAGACAGAACTGATGTCTATAGATGATGAGATTGTCACTTGTCTGGACCTGGTGTCTCCAACTACAACTATGCAGAAAAAACGTAAAAAGCCTAAATTTATAGCAGATGGTGAAGAAGAGAAGATATTAAAGAAGTCCAAGAAGACCAAGAGGGCTATTGACACTGGTGCTTCAGATTTAGATTATGCATTGTTAGGTTTGCCAGATGAACATGCAGAATCAAAGCAATGCGAAAGTATAGTTGACTTTGAACAGAAACCTGCCAGCAGGAGTAAGATGGGAGGGAAAATATCCATAACTCCAATGCCAGTAAAACGGATCCTGATGATAAAGCCAGAAAAAGTGAAGAAGGGAAATGCTTGGTTCAAAGATTGTGTTCCATCAGCTGATTTTTGGTTGCCACAGGAAGATGCAATTTTATGTGCAGTTGTTCATGAATATGGTTCTAACTGGAGTTTGCATTCTCAGAATTCTCTGAAGAAAACTTCTGAAAGGATGTCATCCACTAATTTGGCTCAGAGCAGGAAGTTATTAGCTGCTGCGCTTGAGGACACCAGCAGTAGGCAACAAGATGATAAAATATCCTCCTCTAAAGAGGGTGATGATATGCCAGTGACTACAGATCAATTGGATGTAACACTGGAGTTCCAGAAAGAGGAGAGTGACGCTTTGTTGTCATTTCCATCTGTTATAAATTTATCAATACATGGGACAGAACCACTGCCATCATTAAATAAGGCAACTGGGGAAGATGATCGACTTAGAGCTTGTCAGTCAGTTGCTGAGGAACGGCTCAGCACTGCTGGCTGCCCTTTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCTGGTGGCTACAATGCTGTTGCCCATATGATGAATCTAACACCTGCTGCACCACCAGCATCTAGAAATATTGCAGCCCCTCCACCAGTCCCTAATGGGTCCGCACAACCTTCTGTTAAATCACGCATATGCAACAAGTACAATACTGCAGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAGTCTGTTGCGCCCTCAGTGGATGATCATCGTACTGTGGGGCTTATCTCTAGCCGTTTGGCTGGTCGAATGGAGCCACCTCCTGTTGCTAGCTTTGGTGCCAATGCCACAGCTAAGATCAGTGTCGAAGCTTCCTTGGCTGGGGCTATCATTGGAAAGGGTGGTGTGAACTCCAAACAGATCTGCCGCCAAACAGGAGCCAAACTTTCAATTCGGGATCATGAGTCAGATCCAAATCTTAGAAACATTGAACTTGAGGGTAGCTTTGAACAAATTAAGGAAGCAAGTAACATGGTAAAAGAGTTACTGGTGACCTTATCAATGTCTGCGCCACCTAAAACTCATGGCGTTCCCGGAGCACCAGGCTCTCATGGAAGCAACTTTAAGACAAAGCTGTGCGAGAATTTTACCAAAGGATCTTGCACCTTTGGAGATAGATGTCACTTTGCACATGGGGCTGCTGAATTGCGTAAATCAGGAGTatga 5685 0.4109 MASKGPRSKIDHESRAKRQKEEEQRLRKVALNISKDVKKFWLKIEKLVLYKHQRELEEKKKKAQDKQLEFLLGQTERYSTMLAENLVDAIKPVEKQLPEQNRSTQFREVDEDVFNQSNEVNAVIYRKCWYCFQEDDEQTLVEDEALITEEERREELAALHDEIDLPIEELLKRYSGEKGSVTEESSPHHSEDDNKIVKAGNGNENGDDLFSVSKISSCNSSMAPGRRCDESNGGQSTPTDNTRQSENLIQISSERATKTFVYDFNDEEYSSDDERGEDESGKASAVSEDLVDSSFHEDSRKKDPAVSVDEDVKPVEHLDVLQPQAEEQNWEAPHENSEGRESENLIADAAAAARSAQPTGNTFSTTQVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASTETQVTLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSLDMWGIDVQLSSAVCKMFSSSPFSMVDLRGLGFLFTHLDYTMTSWESDELKAIETPASLIMERTDANDLQVIRPEPKHQKKVPGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCRKRPIYSTTLRDLLTIRHPVYDIHQVKANPISYMYSSKLADIVLSPVERFQRMIDVVESFMFAIPAARAPSPVCWCSRSEVPVFLNPSYKQKCSEVLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPDKNMQKEKTQTSGAEVSVTNADVEEALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLEEDEYVNEDDMKVDEPAELGESVSKLSKENALMLVGSEPKEERALSVAVKDDDGDMLADVKQMAAAAAASGQAISAFENQLRPIDRYAIRYLEVWDPIIDKAALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERWDADFATEAYRQQVEALAQHQLMEELENEARQKEEADEENCNSGKTQAARDSKPKPKKKPKKTKFKSLKKGSLASESRPMKEELQTELMSIDDEIVTCLDLVSPTTTMQKKRKKPKFIADGEEEKILKKSKKTKRAIDTGASDLDYALLGLPDEHAESKQCESIVDFEQKPASRSKMGGKISITPMPVKRILMIKPEKVKKGNAWFKDCVPSADFWLPQEDAILCAVVHEYGSNWSLHSQNSLKKTSERMSSTNLAQSRKLLAAALEDTSSRQQDDKISSSKEGDDMPVTTDQLDVTLEFQKEESDALLSFPSVINLSIHGTEPLPSLNKATGEDDRLRACQSVAEERLSTAGCPFGESCHFLHYVPGGYNAVAHMMNLTPAAPPASRNIAAPPPVPNGSAQPSVKSRICNKYNTAEGCKFGDKCHFAHGEWELGKSVAPSVDDHRTVGLISSRLAGRMEPPPVASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIKEASNMVKELLVTLSMSAPPKTHGVPGAPGSHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRKSGV 1894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2913 1894 SMART ultradead3 376 569 IPR014001 -
Sto13g2913 1894 Coils Coil 1139 1159 - -
Sto13g2913 1894 SMART helicmild6 951 1034 IPR001650 -
Sto13g2913 1894 MobiDBLite consensus disorder prediction 275 317 - -
Sto13g2913 1894 Gene3D K Homology domain, type 1 1765 1859 IPR036612 GO:0003723
Sto13g2913 1894 Pfam Helicase conserved C-terminal domain 924 1034 IPR001650 -
Sto13g2913 1894 ProSiteProfiles Zinc finger C3H1-type profile. 1860 1887 IPR000571 GO:0046872
Sto13g2913 1894 SMART kh_6 1767 1837 IPR004087 GO:0003676
Sto13g2913 1894 MobiDBLite consensus disorder prediction 176 254 - -
Sto13g2913 1894 MobiDBLite consensus disorder prediction 268 342 - -
Sto13g2913 1894 PANTHER HELICASE SRCAP-RELATED 14 1602 - -
Sto13g2913 1894 MobiDBLite consensus disorder prediction 1325 1339 - -
Sto13g2913 1894 ProSiteProfiles Type-1 KH domain profile. 1768 1832 - -
Sto13g2913 1894 MobiDBLite consensus disorder prediction 176 198 - -
Sto13g2913 1894 ProSiteProfiles Zinc finger C3H1-type profile. 1633 1665 IPR000571 GO:0046872
Sto13g2913 1894 Pfam KH domain 1771 1834 IPR004088 GO:0003723
Sto13g2913 1894 SUPERFAMILY CCCH zinc finger 1702 1732 IPR036855 GO:0046872
Sto13g2913 1894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 602 IPR027417 -
Sto13g2913 1894 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1704 1729 IPR000571 GO:0046872
Sto13g2913 1894 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1861 1885 IPR000571 GO:0046872
Sto13g2913 1894 Pfam SNF2-related domain 397 669 IPR000330 GO:0005524|GO:0140658
Sto13g2913 1894 ProSiteProfiles Zinc finger C3H1-type profile. 1702 1730 IPR000571 GO:0046872
Sto13g2913 1894 MobiDBLite consensus disorder prediction 1350 1366 - -
Sto13g2913 1894 SMART c3hfinal6 1860 1886 IPR000571 GO:0046872
Sto13g2913 1894 SMART c3hfinal6 1702 1729 IPR000571 GO:0046872
Sto13g2913 1894 SMART c3hfinal6 1633 1664 IPR000571 GO:0046872
Sto13g2913 1894 Gene3D - 626 697 - -
Sto13g2913 1894 PANTHER HELICASE SRCAP 14 1602 - -
Sto13g2913 1894 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 392 557 IPR014001 -
Sto13g2913 1894 Coils Coil 1314 1341 - -
Sto13g2913 1894 Gene3D - 894 1140 IPR027417 -
Sto13g2913 1894 SUPERFAMILY CCCH zinc finger 1859 1890 IPR036855 GO:0046872
Sto13g2913 1894 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 1759 1838 IPR036612 GO:0003723
Sto13g2913 1894 Coils Coil 49 69 - -
Sto13g2913 1894 CDD KH-I 1770 1833 - -
Sto13g2913 1894 MobiDBLite consensus disorder prediction 1565 1587 - -
Sto13g2913 1894 MobiDBLite consensus disorder prediction 206 254 - -
Sto13g2913 1894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 1092 IPR027417 -
Sto13g2913 1894 MobiDBLite consensus disorder prediction 1 24 - -
Sto13g2913 1894 Gene3D - 1860 1892 - -
Sto13g2913 1894 Gene3D - 1697 1734 - -
Sto13g2913 1894 Gene3D - 349 625 IPR038718 -
Sto13g2913 1894 Coils Coil 1266 1286 - -
Sto13g2913 1894 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 925 1075 IPR001650 -
Sto13g2913 1894 MobiDBLite consensus disorder prediction 1325 1380 - -
Sto13g2913 1894 CDD SF2_C_SNF 910 1045 - -
Sto13g2913 1894 CDD DEXQc_SRCAP 380 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2913 Sto-Chr13 34261082 34281148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2913 400 672 RAD5 or RAD16-like Gene Family AT5G43530 29.193 2.02e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto13g2913 SNF2_N 6.3e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2913 - - aprc:113871102 2285.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1239 8 7820074 7825070 Sto13g2913 13 34261082 34281148 CCT
Sto13g2913 13 34261082 34281148 Sto13g2913 13 34261082 34281148 ECH