Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2907 ATGAAGGAGAGCAGGGTGGGTTTCCAAGGACGGATTCAACAGAGGCATGGACTCAATGGGGATTTCAATTCTGAGTTTTTTCATCGTTCTTGTCAATATTTTCAGATCAAACAGGCTTGGAATATGGGTGCTGGAGGAGGAGTAGCAGAACAGATCACACCACCATACATGGGCCCTGAAACTGCAAAACCATCAATTTCCATGATCGGTGGTTTTGAATCACCCACTTCTGCTTTTTATGCAGCAGAAACATGCATGGGGTTTTCACAACATCATTCCCAATCCCAAGTTAAtactaacaacaacaacaataataattataataataatctcCCTTTGAACTCTCCCTTCTCTAAGATTCATGATTTGGAACTCCCTTTGTATCAATCTCCTAGGGTGAACCATTTCTTGGAGCATTCACCACACCAACCTGATTCCACCAATGTCCAATTCTCAGACACCTTGCAAGCAATGCTGAAATCCCAATTCAATAGTGATCCAAATCCGTACTGTGGATCACCAGAAAAACCCAATAAAATCTCATGTGGGAATTTTCCAATCACCAAGTTTCTTCCCTTTGAACAACATAATTTGTTCAATGTTGATGATGCTGCCTCGGCTAGGACAAGGAGGAATCATATAGTTGGTTGTGGGTCCTATAACTTACCTGTTTCTCAGTTAAGCTTCTCATCTCAGCAAGAGAAGCTGTGTAGTCCAACAGTTTCAGCTAATGGAAATTATCCTACTTCTGGTGGGACAATAGTTTCAAGTAAAACACGTATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGCGGTGCCGAGAAGGCAACACCAAAAGCTATACTAAAGCTGATGGACTCAGATGGATTGACCATCTTCCATGTAAAGAGTCATTTGCAGAAATATAGAATTGCAAAATACATGCCAGATCCGGCTCAAGGTAAGTCTGAGAAAAGAACCCATATAGAGGATGGACATCATATGGACGTCAAAACTGGCATGCAAATTAGAGAGGCACTTCAGCTGCAGCTAGATGTTCAGAGGCGTCTTCATGAACAGCTAGAGATTCAGAGAAAACTACAGCTTCGAATTGAAGAACAGGGAAAGCAGCTGAAGATGATGTTTGATCAACAGCAGAAGACAAGTAGTAGCCTTTTGAGTACTCAGAATTTGGGCGTTACaccaaatgatgatgatgcgTCTGGGATTAGTCTTAAAGAGTTTGAGGCTTCAAAATTTTCTGAAGGGACTGGAAATTCCTTCTTCCCTTCCAAAATAAGTTAG 1308 0.4014 MKESRVGFQGRIQQRHGLNGDFNSEFFHRSCQYFQIKQAWNMGAGGGVAEQITPPYMGPETAKPSISMIGGFESPTSAFYAAETCMGFSQHHSQSQVNTNNNNNNNYNNNLPLNSPFSKIHDLELPLYQSPRVNHFLEHSPHQPDSTNVQFSDTLQAMLKSQFNSDPNPYCGSPEKPNKISCGNFPITKFLPFEQHNLFNVDDAASARTRRNHIVGCGSYNLPVSQLSFSSQQEKLCSPTVSANGNYPTSGGTIVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVKSHLQKYRIAKYMPDPAQGKSEKRTHIEDGHHMDVKTGMQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSSSLLSTQNLGVTPNDDDASGISLKEFEASKFSEGTGNSFFPSKIS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2907 435 Coils Coil 345 365 - -
Sto13g2907 435 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 313 IPR006447 GO:0003677
Sto13g2907 435 Pfam Myb-like DNA-binding domain 262 311 IPR001005 -
Sto13g2907 435 Gene3D - 257 316 - -
Sto13g2907 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 315 IPR017930 -
Sto13g2907 435 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 62 435 - -
Sto13g2907 435 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 62 435 IPR044848 GO:0003700
Sto13g2907 435 Pfam MYB-CC type transfactor, LHEQLE motif 342 389 IPR025756 -
Sto13g2907 435 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2907 Sto-Chr13 34218035 34219838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2907 240 386 G2-like Transcription Factor Family AT4G28610 57.718 3.73e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto13g2907 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2907 - - ccaj:109797364 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2907 13 34218035 34219838 Sto13g2907 13 34218035 34219838 ECH