Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2904 ATGGGTTCTACCTCCGTCACTGAACCGGCTCCCGCTGTTGCCTCCAACTCTCTCTCCGACTCCCTCAATGGCTTGAAATTCGGGCAGAAGATATACTTCGAGGACGTGGGCCTGGGAGCTCCGGCCAAGTCCAGCGGCGGGGCGCCTAAGAAGGGAAGGGGTTGTGGGGTTCAAGGGGCTCAGCCTCCAAGGTGTCAGGTTGAAGGATGCAGAGTAGATCTGAGTGATGCCAAGGCTTACTATTCCAGACATAAAGTCTGTAGCATGCACTCCAAATCACCTAGGGTCGTTGTCGCTGGACAGGAGCAAAGGCACATTTTGGGAGTTGAAATTTCAGAAAAGCTAATATGTTGTGTGATAGCCATGACCAGATTTCATCAGCTTTCAGAATTCGATCAAGTAAAACGAAGTTGCCGGAGGCGACTGGCGGGTCATAATGAACGTAGGAGAAAGCCTCCACCCAGCTCCTTACTGGCATCTCGTTATGGCCGATTGGGTGCACCTAATTTTGATAGCAGTAGCAGAGGTGGaggaggagggtttgtaatggAATTCGCAACATTTCCAAAGCTGAGTCTTCGAAACGCAATAGGGGGAAGTCCAACATCGTGCGAGCAGGTGGGTGGTGGAAGCGTGACAGTTCCATGGCAAGGGAATTGTGAGAGTCCATCATCTCTGGTATTCTTGCAAGCAGGTGGAGGAGGAGGATGTTCTTCTCCGGTGGGTGGGACCAGCTTCTGTGGTTCAAGAAATTCTTCTTCAGGGGAAAGCTTCGCAGGAGGAATGACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAGCTTGGGCCCCACGGAACAGAGCACCAAGTCTTGTGCCTGATCTAGGGCTAGGTCACCACATTTCTTCTCACCCTATGAGTAGCCCACTTCCTGGGGAGATTGACGTGTCACAACAGGGAAGGAGGCATTATATGGATGTGGAGCAGCAGTCCAGGGCCTACGATGATTCTCAGCTTCATATGAACTGGTCTCTCTAG 1023 0.5064 MGSTSVTEPAPAVASNSLSDSLNGLKFGQKIYFEDVGLGAPAKSSGGAPKKGRGCGVQGAQPPRCQVEGCRVDLSDAKAYYSRHKVCSMHSKSPRVVVAGQEQRHILGVEISEKLICCVIAMTRFHQLSEFDQVKRSCRRRLAGHNERRRKPPPSSLLASRYGRLGAPNFDSSSRGGGGGFVMEFATFPKLSLRNAIGGSPTSCEQVGGGSVTVPWQGNCESPSSLVFLQAGGGGGCSSPVGGTSFCGSRNSSSGESFAGGMTDSSCALSLLSNQAWAPRNRAPSLVPDLGLGHHISSHPMSSPLPGEIDVSQQGRRHYMDVEQQSRAYDDSQLHMNWSL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2904 340 Pfam SBP domain 65 151 IPR004333 GO:0003677
Sto13g2904 340 SUPERFAMILY SBT domain 63 157 IPR036893 GO:0003677|GO:0005634
Sto13g2904 340 ProSiteProfiles Zinc finger SBP-type profile. 62 152 IPR004333 GO:0003677
Sto13g2904 340 MobiDBLite consensus disorder prediction 142 162 - -
Sto13g2904 340 Gene3D - 55 139 IPR036893 GO:0003677|GO:0005634
Sto13g2904 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 1 286 - -
Sto13g2904 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 286 340 - -
Sto13g2904 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 286 IPR044817 GO:0003677
Sto13g2904 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 286 340 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2904 Sto-Chr13 34192814 34195542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2904 25 340 SBP-box Gene Family AT2G42200 37.401 1.20e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto13g2904 SBP 5.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2904 - - gmx:100780949 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2904 13 34192814 34195542 Sto13g2904 13 34192814 34195542 ECH