Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2898 TTGGGCATTGATGGGGTAATCCGTAATCGTAGTGGAAGACacgaagaagaaggggaagagacaAAGGTTTTAGGTTCGTCTCTAATGGCTAATTCCGGTATGAACCAAACGAGTATTCATCAGCTGGAACCACCtcgtcgtcatcatcatcagcaACAACACCACCAAATTTCTTTCGGAATGATGCAACCTTCTCCATCTTCCTTTATTCCCGAAAACTACCTGCAAAACAAGGATTCTGGGGCCTATGAGTTGGGTGAACTGGATCAAGCCCTTTTTCTCTATCTTGATGGACAAGACCCCTCTACCTCTACTGTTCAAGACCAAAAACCAGAGAACTCATCATCAGGAATGAGGCCTCCCACTCTCAACATTTTCCCATCTCAGCCTATGCACGTACACCCACCCTCCACCACTACCAAGGCTAGCATGGACTTACTTCCTCCGCAAATAACCAGTGGTAATTCCAAGACACCATCAGAACCGTCGATGGAGTTGGCCAACCCACGAAATGAAGCGGCCTCCGCACCTGAACCACCCAAGACGTCCCTCAAGACTCTTAGAAGACTTGCTCAGAATAGGGAGGCAGCTAGGAAAAGCAGGCTTCGGAAAAAGGCATATGTTCAGCAGCTAGAGTCAAGTAGGATTAGGCTTAATCAGCTGGAGCAAGAGCTACATCGTGCAAGAGCACAAGGCGTACTCTTCAGCGGAAGTGCAGCTTTGGGAGATCAAGGCCTTCCTATGGCTATGACCAACATTAGCTCAGATGCTGCGATGTTTGACGTAGAATATGCGAGATGGTTAGAGGAGCACCACCGAATAGTGGGGGAACTAAGAGCTGCAGTGCAAGAGCACCTCCCTGAGAACGAGCTTAGACTATATGTTGAGAATTGCTTGGCACATTATGAGCAGGTGATGAACCTCAAGAGTATAGTGGCAAAAACAGACGTATTCCACATTGTATCTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGGTTCAGGCCATCTGAACTCATTAAGATTATTGTGAGTCAGATAGAGCCGCTGACGGAGCAACAAATAGTGGGTATATGTGGGTTGCAACAATCTACGCAAGAGGCAGAAGATGCTCTCTCCCAAGGGCTGGAAgctctcactcactcactctcaGACACTATAACATCCGACTCTCTCAGTTGTCCACCCAACATGAATAACTACATGGGACAGATGGCCATGGCCATAAATAAGCTCTCCACTCTCGAAGGTTTCGTCAGACAGGCGGATAATCTTCGACATCAGACAATTCACCGTCTGCATCAGATGCTTACGACGCGTCAAGCGGCGAGGTGTATGGTGGCCATGGCGGAGTACTTCCATCGTCTACGAGCACTAAGTTCTCTGTGGATGGGACGCCCTCGCCAAGATTAA 1428 0.4629 LGIDGVIRNRSGRHEEEGEETKVLGSSLMANSGMNQTSIHQLEPPRRHHHQQQHHQISFGMMQPSPSSFIPENYLQNKDSGAYELGELDQALFLYLDGQDPSTSTVQDQKPENSSSGMRPPTLNIFPSQPMHVHPPSTTTKASMDLLPPQITSGNSKTPSEPSMELANPRNEAASAPEPPKTSLKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELHRARAQGVLFSGSAALGDQGLPMAMTNISSDAAMFDVEYARWLEEHHRIVGELRAAVQEHLPENELRLYVENCLAHYEQVMNLKSIVAKTDVFHIVSGMWKTPAERCFMWIGGFRPSELIKIIVSQIEPLTEQQIVGICGLQQSTQEAEDALSQGLEALTHSLSDTITSDSLSCPPNMNNYMGQMAMAINKLSTLEGFVRQADNLRHQTIHRLHQMLTTRQAARCMVAMAEYFHRLRALSSLWMGRPRQD 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2898 475 Pfam Seed dormancy control 276 350 IPR025422 GO:0006351|GO:0043565
Sto13g2898 475 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
Sto13g2898 475 ProSiteProfiles DOG1 domain profile. 257 471 IPR025422 GO:0006351|GO:0043565
Sto13g2898 475 SMART brlzneu 181 234 IPR004827 GO:0003700|GO:0006355
Sto13g2898 475 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700|GO:0006355
Sto13g2898 475 Pfam bZIP transcription factor 183 215 IPR004827 GO:0003700|GO:0006355
Sto13g2898 475 MobiDBLite consensus disorder prediction 8 22 - -
Sto13g2898 475 MobiDBLite consensus disorder prediction 99 184 - -
Sto13g2898 475 CDD bZIP_HBP1b-like 185 237 - -
Sto13g2898 475 MobiDBLite consensus disorder prediction 131 165 - -
Sto13g2898 475 Gene3D - 185 233 - -
Sto13g2898 475 PANTHER TRANSCRIPTION FACTOR TGA9 91 474 - -
Sto13g2898 475 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 91 474 - -
Sto13g2898 475 MobiDBLite consensus disorder prediction 99 123 - -
Sto13g2898 475 MobiDBLite consensus disorder prediction 1 22 - -
Sto13g2898 475 SUPERFAMILY Leucine zipper domain 185 227 IPR046347 GO:0003700|GO:0006355
Sto13g2898 475 Coils Coil 204 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2898 Sto-Chr13 34130192 34135869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2898 73 475 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 61.364 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sto13g2898 DOG1 3.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2898 K14431 - gmx:100815176 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1254 8 7917415 7918571 Sto13g2898 13 34130192 34135869 CCT
Sto13g2898 13 34130192 34135869 Sto13g2898 13 34130192 34135869 ECH