Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2889 ATGGATTTGAATTCCAATCACACCTATCAGAACCACCAACAGCATCAATCCAATTCTGGATTGCTTCGCTTTCGCTCTGCCCCTACCTCACTTCTAGCGAATTTCACGCAAGGTCTTGAATCTGCAGAATCCGAGAGACGAATTTCTAGATTGGCAAACTGCAATAGTAGTAGTAATAGCAGCGATACGGCGTCGCCCAGTTTTCAAGAATTTGAGCACAAAACTTCTAAGCCGCGGATGGAGGCTGCTCTGAACCCAACGAATTCCCTGCAAGGCTATAGTGGGAGTGGTCTTCCCCCTCACTATCCCAGGCATGGTTCTACTGCTAGTCCCTCCATGGACTCCTATGGACTCATGGGTTCAATAGGAATGGATCACGAAACGCATTCCAAAAGCTTTGGTTCGCATCTTCTCAGGCAGAGTAGCTCCCCTGCTGGCCTTTTCTCCAACATCTCCTTCCCAAATGGGTATGGCCCCATGAAAGGTGTAAGAAACTATGGTGGGGTGAATGACAGTAGTAATGGAGAACTTACTCCATCTATAAACGGATTGAAGAATCAGATCAGCTTCTCATCAAGAAGTAGTTCCTTGGGAGTGTTGTCACAGATCACTGAAGCAGGGTGTGAGAACATTGGGGAAACTAGCCCTGAAGATGGTAGGCTAGGAGGTAAAAGTAGTGATGCCCGATATTATGGCACTGGCTTCCCTTATGGTTCCTGGAATGATAACTCAGAAAATCTGGCTGGCCTGAAAAGAGAGCAAACTAGTAATGAAAAGTTGTTTTCTGATGGTCAGAATGGAGAACTAGGAAATCGAGTTCATGTACTATCGCATCACTTGAGTTTGCCTAAAACAACCCCAGTGGAGATGGCTGCTGTGGAGAAGTTCCTTCAATTCCCAGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGGGGCTGTGCTACTCATCCTCGAAGCATTGCAGAAAGGGTGAGAAGAACTCGGATTAGTGAACGAATGAGAAAATTACAGGAGCTTGTTCCAAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGCTGTGTACATAAAAGATCTTCAGAAACAATTTAAGGGATTTATAGCGGGGAGAATGTCGAATTTGTACGGCGATTTTAATAATAAGATTGATTATGTATTCAAAGTGGTGTTGATCGGGGACTCTGCCGTTGGTAAAACTCAATTGCTCGCTCGCTTTTCAAGGAATGAATTCAGCATGGATTCCAAAGCCACTATTGGGGTTGAATTCCAGACTAAAACGCTCGTTATTGATCAAAAGACGGTCAAAGCACAGATTTGGGATACTGCTGGCCAAGAAAGGTACAGGGCCGTTACTAGTGCATACTATCGAGGTGCAGTTGGGGCAATGTTAGTTTATGACATGACTAAGCGTCAATCATTTGATCACATGGCAAGATGGTTAGAGGAACTGAGAGGTCATGCTGACAAAAACATTGTTATCATGCTAATTGGCAATAAGTGTGATTTGGGAAGTCTTAGAGCAGTTCCAACTGAAGATGCCCAAGAATTCGCGCAAAGAGAGAACCTATTCTTTATGGAGACGTCAGCACTTGAATCTACTAATGTAGAAACTGCCTTTATTACTATTCTAACCGAGATATACCGAATTATCAGCAGAAAAACACTTACTGCCAATGGTGAAGCAGGTCCTAATAGCTTTAAGGGAAGTGTTATAGTTGTTCCTAACCCGGATGGTGATGCTGGGGGAAAGAAGGGCGGTTGCTGCTAA 1779 0.4418 MDLNSNHTYQNHQQHQSNSGLLRFRSAPTSLLANFTQGLESAESERRISRLANCNSSSNSSDTASPSFQEFEHKTSKPRMEAALNPTNSLQGYSGSGLPPHYPRHGSTASPSMDSYGLMGSIGMDHETHSKSFGSHLLRQSSSPAGLFSNISFPNGYGPMKGVRNYGGVNDSSNGELTPSINGLKNQISFSSRSSSLGVLSQITEAGCENIGETSPEDGRLGGKSSDARYYGTGFPYGSWNDNSENLAGLKREQTSNEKLFSDGQNGELGNRVHVLSHHLSLPKTTPVEMAAVEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAAVYIKDLQKQFKGFIAGRMSNLYGDFNNKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSMDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALESTNVETAFITILTEIYRIISRKTLTANGEAGPNSFKGSVIVVPNPDGDAGGKKGGCC 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2889 592 MobiDBLite consensus disorder prediction 53 114 - -
Sto13g2889 592 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 370 IPR036638 GO:0046983
Sto13g2889 592 Gene3D - 382 575 IPR027417 -
Sto13g2889 592 SMART ras_sub_4 387 553 - -
Sto13g2889 592 TIGRFAM small_GTP: small GTP-binding protein domain 389 546 IPR005225 GO:0005525
Sto13g2889 592 Gene3D - 310 369 IPR036638 GO:0046983
Sto13g2889 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 557 IPR027417 -
Sto13g2889 592 MobiDBLite consensus disorder prediction 81 95 - -
Sto13g2889 592 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 375 592 - -
Sto13g2889 592 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 363 IPR011598 GO:0046983
Sto13g2889 592 Pfam Helix-loop-helix DNA-binding domain 318 364 IPR011598 GO:0046983
Sto13g2889 592 ProSiteProfiles small GTPase Rho family profile. 383 554 - -
Sto13g2889 592 CDD Rab11_like 387 551 - -
Sto13g2889 592 SMART ran_sub_2 395 585 - -
Sto13g2889 592 MobiDBLite consensus disorder prediction 53 71 - -
Sto13g2889 592 SMART arf_sub_2 375 555 - -
Sto13g2889 592 PRINTS Transforming protein P21 ras signature 390 411 - -
Sto13g2889 592 PRINTS Transforming protein P21 ras signature 413 429 - -
Sto13g2889 592 PRINTS Transforming protein P21 ras signature 431 453 - -
Sto13g2889 592 PRINTS Transforming protein P21 ras signature 493 506 - -
Sto13g2889 592 PRINTS Transforming protein P21 ras signature 528 550 - -
Sto13g2889 592 PANTHER - 375 592 - -
Sto13g2889 592 SMART rab_sub_5 390 553 - -
Sto13g2889 592 Pfam Ras family 391 551 IPR001806 GO:0003924|GO:0005525
Sto13g2889 592 ProSiteProfiles small GTPase Rab1 family profile. 385 592 - -
Sto13g2889 592 ProSiteProfiles small GTPase Ras family profile. 384 577 IPR001806 GO:0003924|GO:0005525
Sto13g2889 592 SMART rho_sub_3 392 549 IPR001806 GO:0003924|GO:0005525
Sto13g2889 592 SMART finulus 319 369 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2889 Sto-Chr13 34082194 34088680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2889 1 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.740 1.74e-96 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g2889 Ras 1.5e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2889 - K07904 jre:109020257 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2889 13 34082194 34088680 Sto13g2889 13 34082194 34088680 ECH