Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2888 atgccTATCCCTCCACACATTGCTCTATTTCTCATATGCTTATTCTTTGCTCCTACTTCAACCACCTCTCTCAACTCCGATGCTCTCTCTCTTCTCGCCCTCAAAGCCGCCATTGACTCTGACCCCACCGGCGTTCTCGACCCATGGTCCGACTCCGACTCCCACCCTACCCCCTGTCGCTGGCCCGGCGTCGTCTGTGCCCACGACCGAGTCACCCAACTCTACCTTCCCAACAAAGCCTTAACCGGCTACCTCCCCTCAGAACTCGGTCTCCTCCACTCTCTCAAGCGGCTCAGTCTTCCCCACAACAACTTCTCCAAAGTAATTCCTTCCAGTCTCTTCAACGCCACCCGTCTTGTCGTTTTGGACCTTTCTCACAACTCTCTCTCCGGTCCAATCCCTACTGAAATCGGGTCTCTCAAATCACTCAGGCATTTGGATTTATCCAACAATTTCCTCAATGCAACTCTCCCTCGCTATCTCTCCGACCTCACCGGTCTCGTCGGAACCTTGAATCTCTCTCACAATTTCTTCTCCGGTGGAGTCCCGGAGTCTCTCGGGAGACTCCCTGTGACGGTGAGTTTGGATCTCCAGAGCAACAATCTCACTGGAAAAATTCCTCAGGTAGGATTTAATTTGGAATTAGAGGATTTATTAAGGGCATCTGCGGATGTGGTGGGGAAAAGCAGGAGCGGGATCGTGTATAAGGTGGTGGCTGTTGCGAGGGGATCATGTCCGGGCACTGTGGTGGCCGTCAGGCGGTTGAGTGAAGGTGATGCCACGTGGCGTCTCAAGGAGTTTGAATCAGAAGTGGAGGCCATCTCTAGGGTCCATCACCCCAATATAGTTCCGCTTAGAGCTTATTACTATGCAAACGATGAGAAACTGCTTATCACTGATTTCATCCGCAATGGAAGCTTGCACACTGCACTGCATGGACATGGAGGGCCTTCCAATGCTCTGCCTACGTTATCATGGGCAGTGAGGTTAAAAATTGCTCAAGGAGCTGCAAGGGGTTTGATGTACATACACGACTTCAGCGGTCGAAAATATGTCCATGGCAACCTGAAATCCACAAAGATCTTACTGGATGATGATCTCCATCCTTACATATCTGGTTTTGGATTTACTGGTCTTGGTTTGAGTACCTCAAAGTTGGCACCAAAAGGGCAGTCTATTGTTACTTCATCAGGGTATTCAAAAGTTGGAGTTTGGTGTAATAACTACTTGGCGCCTGAGGTACGCATTGTTGGTGGGAAGTTGACTCAGAAATGTGATGTGTACTCTTTTGGAATAGTGCTGTTAGAACTCCTGACGGGTGGGCTGGGGGAGAAAGATGGTACGGTATTAGAGAGCTTTGTGAGGAAAGCATTCAGGGAGGAGCAGGCATTGTGTGAGATCATAGACCCTGCACTTTTGCCTGAGGCTTATGCTAAGAAACAAGTTATTGCAGCATTTCACATTGCACTCAACTGCACAGAACTTGAGCCAGAGATGCGTCCTAGAATGAGAACCGTGTCTGAGAGCCTTGATCGCATCAGAATACACTACTGA 1554 0.4923 MPIPPHIALFLICLFFAPTSTTSLNSDALSLLALKAAIDSDPTGVLDPWSDSDSHPTPCRWPGVVCAHDRVTQLYLPNKALTGYLPSELGLLHSLKRLSLPHNNFSKVIPSSLFNATRLVVLDLSHNSLSGPIPTEIGSLKSLRHLDLSNNFLNATLPRYLSDLTGLVGTLNLSHNFFSGGVPESLGRLPVTVSLDLQSNNLTGKIPQVGFNLELEDLLRASADVVGKSRSGIVYKVVAVARGSCPGTVVAVRRLSEGDATWRLKEFESEVEAISRVHHPNIVPLRAYYYANDEKLLITDFIRNGSLHTALHGHGGPSNALPTLSWAVRLKIAQGAARGLMYIHDFSGRKYVHGNLKSTKILLDDDLHPYISGFGFTGLGLSTSKLAPKGQSIVTSSGYSKVGVWCNNYLAPEVRIVGGKLTQKCDVYSFGIVLLELLTGGLGEKDGTVLESFVRKAFREEQALCEIIDPALLPEAYAKKQVIAAFHIALNCTELEPEMRPRMRTVSESLDRIRIHY 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2888 517 PRINTS Leucine-rich repeat signature 119 132 - -
Sto13g2888 517 PRINTS Leucine-rich repeat signature 140 153 - -
Sto13g2888 517 Pfam Leucine rich repeat 94 151 IPR001611 GO:0005515
Sto13g2888 517 Gene3D Ribonuclease Inhibitor 170 223 IPR032675 -
Sto13g2888 517 Pfam Protein tyrosine and serine/threonine kinase 225 510 IPR001245 GO:0004672|GO:0006468
Sto13g2888 517 Gene3D Transferase(Phosphotransferase) domain 1 303 516 - -
Sto13g2888 517 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 210 - -
Sto13g2888 517 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 210 515 - -
Sto13g2888 517 ProSiteProfiles Protein kinase domain profile. 220 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g2888 517 Gene3D Ribonuclease Inhibitor 24 169 IPR032675 -
Sto13g2888 517 SUPERFAMILY Protein kinase-like (PK-like) 224 514 IPR011009 -
Sto13g2888 517 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Sto13g2888 517 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 210 515 - -
Sto13g2888 517 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 4 210 - -
Sto13g2888 517 Gene3D Phosphorylase Kinase; domain 1 226 302 - -
Sto13g2888 517 SMART LRR_typ_2 140 164 IPR003591 -
Sto13g2888 517 SMART LRR_typ_2 92 116 IPR003591 -
Sto13g2888 517 SUPERFAMILY L domain-like 28 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2888 Sto-Chr13 34076040 34078792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2888 210 514 Receptor kinase-like Gene Family AT3G57830 62.154 3.60e-125 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sto13g2888 PK_Tyr_Ser-Thr 6.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2888 - - gmx:100796011 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2888 13 34076040 34078792 Sto13g2888 13 34076040 34078792 ECH