Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2883 ATGGAGCCGACTACAGGAGGCTTGTCCGGATCCAGTCTTGCTATTCGTGACCACGATAAGACCACACTCGAATCCATCCAATTCAACCAAGAAATCCAGGGAATCATGGCCCCACCCCCTGAAAACGCGAGCTCCTTCACTGCACTTCTCGAACTCCCCCCACCGCAAGCCGTGGAGCTCCTTCACTCGCCGGATTGTGACGGAAcggccgccgccgccgccgcttcTGCTAGCAGCGCTTCCAGCAAATCCCTATGCCAAATCAACAATCAGAAACCCTATCTATTCCACTCTTTCAGTAGCAATTTAACCTTTCCTTCTAACGCTGCGTTGATCGAGCGTGCCGCCAAATTCTCCGTATTTGCCGGAGAAAGCTCGCCGCCGGAGGAATCTAGCTTGGTTGCACCTAATTCGGGTGCAAATTTGGATAAGGTGAAGAATGAACCCCCAGAAACCGATTCGAATCCTAGTTCAATGCAGGGGTGTGTATCTGATCCAGCCGTTGAGAACCAGAACCAGAGGGCCGCAAAGAGGAAGGAACGAGAGAAGAAGGTCAAAGGGTCCTCAAAAAAGAGTAAGGGCGTCGCCGACGAGGCCTCCGGGGATGCTGAAAAGCTTCCCTACGTTCATGTTCGAGCTCGTCGTGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGCAATAAGATATCAGGAACAGCTTTAGTTCTGGATGAAATCATCAACCATGTACAATCTCTACAACGTCAAGTGGAGTTCCTATCAATGAAACTGGCCGCAGTTAATCCAAGAATTGATTTCAACCTTGACAGCATATTGGCTACAGAAGGTGCATCTCTCATGGACTGTAACTTTCCTCACATGGTTACACCTCTGATGTGGCCAGAAATCCCAGTCAATGGGAACAGACAGCAATATCAACAACAATGGCAAGTTGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAGGGAaccataataattttatcactcCAGAGAACTCTTTTTTGAGTTATGACTCATCAGCAAATTCAGTTGGAAACCAGGATTCTACTCAAccagaagggaagaagaattgCTGTCGTCCAAAAGTCAGCTATGATATTACTACGACTTCGGATCCGAAGAGCGTATCAGAGAAGATAGAGAAAGACACGAAACTCCACGCCTCTCTTCTCGTCTCTGCTGCTTTGGTATCCAACTCCGTTGCTTCCAAGCTTATGAGCCTGTATGTTCGGTTTCATGACCTTGCCACTGTCCTTGGGGTATTCAGAACTGTACAGCAAGAGCCTGATACAATGATGTGGAATTTGGTCATAAGGTCTCATGTTGATTTGGGATTCTTCCATGCCGCATTTTTATTGTACAAACAGATGAGACAATCAGGCGCTTTCCATGATACTTTTACTTTTCCTTTAATAAACCAAGCCTTATCGTCCATCCGAAGCGATGTCGTATTTGGAAAAATGATCCACTGTCAAGCAATTCAAACGGGTTTGGATCTGGATTTGTATTTTTGCAATACCATGATTGATGTATACGTCAAATGTGGGTGTCTCAGTTGTGCACGTAACCTGTTTGATGTTATGTTGCAGAGAGATTTGGTTTCCTGGACGTCTGTGATCGCTGGGTATATTTCTGAGAGAAATGTTAGTGTCGCCTCTGAATTGTTTAACCAAATGAGGTTGGAAATGGAGCCAAATTCGGTGACTCTAATTGTCATGTTGCGAGCATGTTGTGCTTCTGGAGCTTTGATGGATGGAAATCAAGTTCATGGGTATGCTATAAAGAGCGGATTGCTAATGGATACTTCTGTGCAAAATGCTGTTTTGAGCATGTATGCTAACATGGGGAATACTAAAGGAGTAGAAACTATTTTCAGTGAAGTTGACAGAAAAGACGTTGTTTCCTGGAATATTTTGATTTCCTTTCATGGAACGAGAGGAGATATCATGGAAGTAGCTCATATGTTCAGTAAAATGCACAGGGGAGAAGAGTCATCATGGAACGCTAGGACTTTAACCCTAGTATTGTCAGCAATTGCAAAGTCGGGTAGTCTTTCTGAGGGTGAAAGCCTACATTGTTTAGTCATAAAAACAGGTTTATCTGATGATATTTTGCTGACTTCTTTGCTTGATTTTTACGCAAAATGTGGGAAATTGGAAATATCTGTTGAATTGTTCAGAGAAATTCACTGTAAAAGTAACATTACTTGGGGTGCTATGATGTCTGGTCTTATTCAGAATGGCTATTTTGTGGAGACCATAACTTTATTCAAACAAATGCAAGCTGCAGATCTTGCTCTAGACCCTGAAATTTGGAGAAATCTAATTGATGCACACGCTAATCTGGGTGCTCTGAAATTGGGCAAAGGGGTTCATGGTTACCTTATAAAGAACTTGTTTAATGGAAGTGAGGCAGATATTGCACGCCTGGAGAACTCTATTTTAAACATGTATATAAGAAGTGGCAGCATTTCATCAGCTAGAGCTTATTTTGACAGGTTAACAGTCAAAGATGTGGTGGCTTGGACAACTATGATTGAGGGATTCGGGTCCCATGGTTTTGGCTTTGAAGCCCTCAACTATTTCAAATTAATGATCGAGCAAAGAGTACAGCCAAACAGTGTCACCTTCTTAAGCTTACTGTCTGCTTGCAGCCATTCTGGTCTAGTAAGTGAGGGCTGCAAAATTTACTGTTCCATGAAGTGGGATTTTGGTATTGAACCAGCTTTGGATCACCACACTTGCATCGTGGATCTTTTGGGTCGATATGGATTGCTTAAGGAGGCTTTAGCCATGATACTGAAAATGATAATTCTAcctgatagcaggatttggGGTGCTCTTCTAGCGGCTTCCAGAGTTTATGGAAACAAAGAAGTCGTAGAATATGCAGCAGAAAGATTTTTGGAATTAGAACCTGATAATGCTGGTTATTATACACTGTTGAGTAATGTAAAAGCGAGTGTTGGAAGATGGGATGAAGTTGAAGAACTAAGGAGAGTTATGAGTGAGAAAAATCTCAAGAAGAAACCAGGGTGGAGCTGCATTGAGGTAAAGGGGGTCATGCAAGGATTCACTTCTGGGGATATATCACATCCTAAAGCAGAAGAGATTTATGAGGCATTGGGTAGTTTAATCATTGCAACTCCTTATGTCTAA 3228 0.4213 MEPTTGGLSGSSLAIRDHDKTTLESIQFNQEIQGIMAPPPENASSFTALLELPPPQAVELLHSPDCDGTAAAAAASASSASSKSLCQINNQKPYLFHSFSSNLTFPSNAALIERAAKFSVFAGESSPPEESSLVAPNSGANLDKVKNEPPETDSNPSSMQGCVSDPAVENQNQRAAKRKEREKKVKGSSKKSKGVADEASGDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFNLDSILATEGASLMDCNFPHMVTPLMWPEIPVNGNRQQYQQQWQVDAFHQPLWGREEGNHNNFITPENSFLSYDSSANSVGNQDSTQPEGKKNCCRPKVSYDITTTSDPKSVSEKIEKDTKLHASLLVSAALVSNSVASKLMSLYVRFHDLATVLGVFRTVQQEPDTMMWNLVIRSHVDLGFFHAAFLLYKQMRQSGAFHDTFTFPLINQALSSIRSDVVFGKMIHCQAIQTGLDLDLYFCNTMIDVYVKCGCLSCARNLFDVMLQRDLVSWTSVIAGYISERNVSVASELFNQMRLEMEPNSVTLIVMLRACCASGALMDGNQVHGYAIKSGLLMDTSVQNAVLSMYANMGNTKGVETIFSEVDRKDVVSWNILISFHGTRGDIMEVAHMFSKMHRGEESSWNARTLTLVLSAIAKSGSLSEGESLHCLVIKTGLSDDILLTSLLDFYAKCGKLEISVELFREIHCKSNITWGAMMSGLIQNGYFVETITLFKQMQAADLALDPEIWRNLIDAHANLGALKLGKGVHGYLIKNLFNGSEADIARLENSILNMYIRSGSISSARAYFDRLTVKDVVAWTTMIEGFGSHGFGFEALNYFKLMIEQRVQPNSVTFLSLLSACSHSGLVSEGCKIYCSMKWDFGIEPALDHHTCIVDLLGRYGLLKEALAMILKMIILPDSRIWGALLAASRVYGNKEVVEYAAERFLELEPDNAGYYTLLSNVKASVGRWDEVEELRRVMSEKNLKKKPGWSCIEVKGVMQGFTSGDISHPKAEEIYEALGSLIIATPYV 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2883 1075 Pfam E+ motif 1048 1069 IPR046849 -
Sto13g2883 1075 Gene3D - 214 287 IPR036638 GO:0046983
Sto13g2883 1075 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 404 1057 - -
Sto13g2883 1075 MobiDBLite consensus disorder prediction 151 171 - -
Sto13g2883 1075 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Sto13g2883 1075 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 861 895 IPR002885 -
Sto13g2883 1075 Pfam PPR repeat 456 484 IPR002885 -
Sto13g2883 1075 Pfam PPR repeat 730 753 IPR002885 -
Sto13g2883 1075 Pfam PPR repeat 657 684 IPR002885 -
Sto13g2883 1075 Pfam PPR repeat 758 785 IPR002885 -
Sto13g2883 1075 Gene3D Tetratricopeptide repeat domain 834 1052 IPR011990 GO:0005515
Sto13g2883 1075 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 286 IPR036638 GO:0046983
Sto13g2883 1075 TIGRFAM PPR: pentatricopeptide repeat domain 528 557 IPR002885 -
Sto13g2883 1075 TIGRFAM PPR: pentatricopeptide repeat domain 758 791 IPR002885 -
Sto13g2883 1075 TIGRFAM PPR: pentatricopeptide repeat domain 456 484 IPR002885 -
Sto13g2883 1075 TIGRFAM PPR: pentatricopeptide repeat domain 557 583 IPR002885 -
Sto13g2883 1075 TIGRFAM PPR: pentatricopeptide repeat domain 863 896 IPR002885 -
Sto13g2883 1075 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 756 790 IPR002885 -
Sto13g2883 1075 SMART finulus 223 273 IPR011598 GO:0046983
Sto13g2883 1075 MobiDBLite consensus disorder prediction 123 203 - -
Sto13g2883 1075 Pfam Helix-loop-helix DNA-binding domain 221 268 IPR011598 GO:0046983
Sto13g2883 1075 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Sto13g2883 1075 CDD bHLH_AtBPE_like 207 292 - -
Sto13g2883 1075 Gene3D Tetratricopeptide repeat domain 724 833 IPR011990 GO:0005515
Sto13g2883 1075 MobiDBLite consensus disorder prediction 187 203 - -
Sto13g2883 1075 Gene3D Tetratricopeptide repeat domain 507 609 IPR011990 GO:0005515
Sto13g2883 1075 Gene3D Tetratricopeptide repeat domain 610 723 IPR011990 GO:0005515
Sto13g2883 1075 Gene3D Tetratricopeptide repeat domain 402 506 IPR011990 GO:0005515
Sto13g2883 1075 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 404 1057 - -
Sto13g2883 1075 Coils Coil 257 277 - -
Sto13g2883 1075 Pfam E motif 978 1040 IPR046848 -
Sto13g2883 1075 Pfam PPR repeat family 860 908 IPR002885 -
Sto13g2883 1075 Pfam PPR repeat family 555 601 IPR002885 -
Sto13g2883 1075 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 267 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2883 Sto-Chr13 34050487 34058807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2883 5 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 54.324 6.62e-99 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g2883 PPR_2 5.1e-08 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2883 - - vra:106770066 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1271 8 7988338 7993719 Sto13g2883 13 34050487 34058807 CCT
Sto13g2883 13 34050487 34058807 Sto13g2883 13 34050487 34058807 ECH