Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2876 ATGGACACCCATCATGCTGACACCAAGTCCAAGATGGAAGACTATGAAGTGATTGAGCAAATTGGCAGAGGAGCATTCGGCTCCGCCTTTCTCGTTCTTCACAATTCCGAGAATAAGAAGTATGTGCTGAAGAAGATTCGCTTGGCCAAGCAAACCGAAAAGTTCAAACGTACAGCGCACCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTAGAAAAGGGAGACCATATATGCATTGTAACTGGCTACTGTGAAGGAGGTGACATGGCTGACAACATAAAGAAAGCTCGGGGATCTTTTTTTCCCGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACCTGCACTCTAATCGTGTACTTCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAATGACATTCGTCTGGGTGACTTTGGTCTGGCAAAGCTGCTTAATACAGAAGACCTTGCTTCCTCGATTGTTGGAACTCCAAATTACATGTGTCCTGAGCTACTTGCAGATATACCTTATGGTTATAAATCTGATATATGGTCACTTGGTTGCTGTATGTTTGAAATTGCTGCACATCAACCGGCATTTCGTGCTCCTGACATGGCTGGGcttatcaataaaataaatagatcctCCATTTCTCCACTGCCAATTGTTTATTCTTCCACCCTGAAACAACTTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGACCAACAGCAGCTGAATTGTTGAGGCATCCTCTTTTACAACCATATGTTCTCCGCTGTCGTAATGCATCATCTAATATTCTTCCAGTATATCCCCTTGTAAACTCAAAGGATAAAACGAAACGATCTTATAGGTCTGGGGGCAGAAAAGACCATAAGGACAAAGAAGTGGGATTAGAAAATCGTTTGGAATGGGTTCATCCATTTGATGGAGATGGAGAGTTACAGCCAAGCAATCTGCGTAATAACAGTAAGCTATTAGTCTCAAGCAGTGCAGAAGACAACCTTCAAACCAAGATGGTTGATCCTACCAGCTTCATTGTGGAATCATCTACTAGTATCAGTGGCTCAAAGGATGGGTCAACAACATCTGAATCAACCATTTGCAGTGTATGCAAGGAAGCAGACTATAAAAGTTTGCCCGCAAGGGAAACAGCTGACAATGAGATTACATCAAAGAGTACACCAGATCCTGAGCATGAAGACCAAAGATTTGATGCTGAACAGCTTCAAAAATCAGAAGGGGATGACATAATTGCAGTGCCTACGAAAGTTGAAGATGCTTTTCTTAATGGAGATTTTGATAAAGCTGAAGTGCAGAAAGAAGTCAAACCTGATGACTCCAGGAAATCAACAACATCAAGTGACAGCTGCACTGATAAAGATGGGTCCCTTGACGAGGAAAGGTCATCACCGACTATGCAGCCTGGTAGTAAGATTGAAGATGACTTTGAATCTGGTTCGCACATGGATTGCTTGTCTTTTGAGAGTAATGATACACTTGCAGGTAAGGATGAAAGCAGAACAAAAACACAAAATCTCAGTTGCTCCACACGCAAAGAAAACGATAGTGCTTGTGTGGTCGATCAGACACCAAGTGACATTTCATTGAGTACAGTTACTGCAATAGGTGGTGAAGAAACCAAGAGCGATTTGGATAGTCCCTGCCAAGAAAGAGCTAATGCTCTGGAATCTCTGCTTGAGTTATGTGCTGAGCTACTTAAGCAAGATAAACTTGAAGAGCTTGCAGGTGTGCTGAGACCATTTGGCCCAGAAGCTGTCTCTTCCAGAGAAACAGCGATATGGTTGACAAAGAGCCTCATGTCCGCACACAAATTTAATACAGAAACCTAG 1902 0.4211 MDTHHADTKSKMEDYEVIEQIGRGAFGSAFLVLHNSENKKYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGDHICIVTGYCEGGDMADNIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLNTEDLASSIVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCRNASSNILPVYPLVNSKDKTKRSYRSGGRKDHKDKEVGLENRLEWVHPFDGDGELQPSNLRNNSKLLVSSSAEDNLQTKMVDPTSFIVESSTSISGSKDGSTTSESTICSVCKEADYKSLPARETADNEITSKSTPDPEHEDQRFDAEQLQKSEGDDIIAVPTKVEDAFLNGDFDKAEVQKEVKPDDSRKSTTSSDSCTDKDGSLDEERSSPTMQPGSKIEDDFESGSHMDCLSFESNDTLAGKDESRTKTQNLSCSTRKENDSACVVDQTPSDISLSTVTAIGGEETKSDLDSPCQERANALESLLELCAELLKQDKLEELAGVLRPFGPEAVSSRETAIWLTKSLMSAHKFNTET 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2876 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Sto13g2876 633 MobiDBLite consensus disorder prediction 409 429 - -
Sto13g2876 633 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 9 489 - -
Sto13g2876 633 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 500 615 - -
Sto13g2876 633 SUPERFAMILY Protein kinase-like (PK-like) 12 300 IPR011009 -
Sto13g2876 633 MobiDBLite consensus disorder prediction 452 484 - -
Sto13g2876 633 CDD STKc_Nek 14 269 - -
Sto13g2876 633 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g2876 633 MobiDBLite consensus disorder prediction 452 514 - -
Sto13g2876 633 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g2876 633 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Sto13g2876 633 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
Sto13g2876 633 Gene3D Transferase(Phosphotransferase) domain 1 95 282 - -
Sto13g2876 633 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 500 615 - -
Sto13g2876 633 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 9 489 - -
Sto13g2876 633 MobiDBLite consensus disorder prediction 396 435 - -
Sto13g2876 633 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2876 Sto-Chr13 34018332 34022753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2876 9 270 MAP Kinase Kinase Kinase AT3G13530 33.459 4.03e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Sto13g2876 Pkinase 8.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2876 K08857 - gmx:100777214 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1276 8 8012183 8015185 Sto13g2876 13 34018332 34022753 CCT
Sto13g2876 13 34018332 34022753 Sto13g2876 13 34018332 34022753 ECH