Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2874 CTGAACAAAGGCCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGCCCTGTTTGCTCCAAAACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCACTGAGGGGAACCCAACCAACTGGGATGCTGAGGCTTCCATGCTATTGCTGTGCTCCAGGATGCAGAAACAACATTGACCATCCAAGAGCCAAACCCCTCAAGGATTTCAGAACCCTTCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCCGAAAGTGTGGCAAGGCTTTTGCTGTGAGAGGAGATTGGAGAACCCATGAAAAGAACTGTGGTAAGCTCTGGTATTGCATCTGTGGCTCTGACTTCAAGCACAAGAGGTCTCTCAAGGATCATATCAAAGCCTTTGGCACTGGTCATGCTGCCCATGCCATTCATGCCTTCCAAGACGAAGATGATCCAGCCTCTGAAGTCGACCaagatcattaa 537 0.4804 LNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGTGHAAHAIHAFQDEDDPASEVDQDH 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2874 178 Gene3D Classic Zinc Finger 20 43 - -
Sto13g2874 178 SUPERFAMILY beta-beta-alpha zinc fingers 87 125 IPR036236 -
Sto13g2874 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 125 IPR013087 -
Sto13g2874 178 SUPERFAMILY beta-beta-alpha zinc fingers 17 43 IPR036236 -
Sto13g2874 178 SMART c2h2final6 105 125 IPR013087 -
Sto13g2874 178 SMART c2h2final6 21 43 IPR013087 -
Sto13g2874 178 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Sto13g2874 178 PANTHER ZINC FINGER PROTEIN WIP2 2 177 IPR043584 GO:0003700|GO:0010468
Sto13g2874 178 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 2 177 - -
Sto13g2874 178 Gene3D Classic Zinc Finger 67 161 - -
Sto13g2874 178 Pfam Zinc finger, C2H2 type 21 40 IPR013087 -
Sto13g2874 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 48 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2874 Sto-Chr13 34004881 34006435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2874 1 176 C2H2 Transcription Factor Family AT3G57670 93.750 6.37e-126 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto13g2874 zf-C2H2 0.0018 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2874 - - qlo:115952484 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1282 8 8039469 8041036 Sto13g2874 13 34004881 34006435 CCT
Sto13g2874 13 34004881 34006435 Sto13g2874 13 34004881 34006435 ECH
Sto13g2874 13 34004881 34006435 Sto12g0099 12 666381 668289 ECH