Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2870 ATGGCAATGGATAGTGGGAACGCTAAGAAGAGAGCATCAGCTCTCACTTTGCAGCAATTCATCTCGATCATGGCCCCTcttattgatttggaaaagGAAGCTGAGATATCAAGCTCAATCGCCTCAGGTGCATCGAGAAATTTGGATAATGCTCAAAAAAGGGGCTCGACAATCCTCAATTTGAAGTGCGCTGATGTCCAGACAGGGCTCATGGGGAAATCTCTTATTGAGTTTCAGTCTACTAAAGGAGATGTTCTTCCTGCACACAAGTTTAGTACACATGACGTTGTTGTTTTAAAACTAAGCAAGGCTGATTTAGGGTCCCCTGCTCTTGGACAAGGTGTAGTTTACCGATTAAAGGACTCCTCAATAACAGTTGCTTTTGATGATATACCAGAAGATGGTTTAAACAGCCCCCTAAGGCTGGAGAAAGTGGCAAATGAGGTGACATACCGTAGGATGAAGGATGCATTGATACAGTTGAGTAAAGGTGTGCACAAGGGTCCTGCTGCTGATCTAATTCCTGTCCTGTTTGGAGAGAGGATGCCTACGGTGTCCAAGAAGGATGTCTCATTTACTCCGTTTAACTCCAACCTTGATCACTCTCAGAAAGATGCAATCTCTAAGGCCCTATCGTCAAAGAATGTATTTTTGCTGCATGGACCTCCTGGAACGGGAAAAACTACAACAGTGGTAGAAATTATATTGCAAGAGGTTAAGCGTGGATCAAAAATTCTTGCCTGTGCTGCATCAAATATTGCTGTTGACAACATTGTTGAACGGCTTGTTCCACGTAgAGTTAAGCTGGTGAGATTGGGTCATCCAGCACGTTTATTGCCTCAAGTACTGGACAGCGCACTGGATGCTCAGGTACTTCGAGGAGATAATAGTTCACTTGCAAATGACATTCGGAAGGAAATGAAGGTATTAAATGGAAAATTGCTGAAAACCAAAGACAGAAATACAAGAAGGGACATCCAGAAGGAACTTAGGACTCTATCTAGAGAAGAACGCAAAAGGCAGCAGCTTGCTGTAACAGACGTAATTAAAAATGCAGATGTGATATTAACCACTTTGATTGGGGCTTTTTCTAAGAAGCTGGATAACACTTCATTTGACTTGGTAATTATTGATGAAGCAGCCCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGggTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTCCCACCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGATTGGGAAGAACCCTCTTTGAACGACTCGCAGAAATGTATGGAGATGAAGTCACGTCTATGCTGACTGTTCAATACCGCATGCATGAACTTATTATGGATTGGTCTTCTAAAGAGCTCTACAACAGCAAGGTCAAAGCCCATGCAAGTGTTGCTGCGCATATGCTGTATGATCTTGAGGATGTGAAGAGGACCTCTTCAACTGAACCAACCCTTCTTCTCATAGACATAGCTGGATGTGACATGGAAGAAAAGAAGGATGAAGAAGATAGCACCATGAATGAAGGTGAAGCAGAAGTTGCCATGGCCCATGCAAAGAGATTAGTGCAGAGTGGTGTGCTACCTTCTGATATTGGAATTATTACCCCTTATGCTGCACAGGTTGTTTTACTCAAGATGTTGAAAAACAAGGAGAACTTACTGAAGAATATTGAAATCTCAACAGTTGATGGCTTCCAGGGAAGAGAGAAGGAAGCCATTATTATATCGATGGTTCGATCAAACTCAAAACAAGAGGTGGGCTTTCTGAGTGATCGCCGCCGAATGAATGTAGCTGTGACACGGGCAAGGAGGCAATGCTGCCTTGTTTGTGACACAGAAACTGTCAGTAGTGATGGATTCTTAAAGCGATTGATTGAGTATTTTGAACAGCATGGCGAGTATCTGAGTGCATCCGACCACGTGGAATAG 1947 0.4278 MAMDSGNAKKRASALTLQQFISIMAPLIDLEKEAEISSSIASGASRNLDNAQKRGSTILNLKCADVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLSKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPAADLIPVLFGERMPTVSKKDVSFTPFNSNLDHSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPRRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSSLANDIRKEMKVLNGKLLKTKDRNTRRDIQKELRTLSREERKRQQLAVTDVIKNADVILTTLIGAFSKKLDNTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEVTSMLTVQYRMHELIMDWSSKELYNSKVKAHASVAAHMLYDLEDVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENLLKNIEISTVDGFQGREKEAIIISMVRSNSKQEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEQHGEYLSASDHVE 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2870 648 Pfam AAA domain 422 618 IPR041679 -
Sto13g2870 648 Gene3D - 445 648 IPR027417 -
Sto13g2870 648 CDD DEXXQc_SMUBP2 198 446 - -
Sto13g2870 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 634 IPR027417 -
Sto13g2870 648 Pfam AAA domain 199 413 IPR041677 GO:0004386
Sto13g2870 648 Gene3D - 43 145 - -
Sto13g2870 648 CDD SF1_C_Upf1 447 635 IPR041679 -
Sto13g2870 648 SMART ultradead3 195 446 IPR014001 -
Sto13g2870 648 Gene3D - 26 429 IPR027417 -
Sto13g2870 648 TIGRFAM TIGR00376: putative DNA helicase 347 642 IPR004483 GO:0003677|GO:0005524
Sto13g2870 648 PANTHER HELICASE WITH ZINC FINGER 2 12 645 - -
Sto13g2870 648 SMART AAA_5 213 465 IPR003593 -
Sto13g2870 648 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 12 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2870 Sto-Chr13 33965811 33971920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2870 172 382 Core DNA Replication Machinery Family AT1G08840 27.488 1.41e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2870 K19036 - gmx:100810545 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2870 13 33965811 33971920 Sto13g2870 13 33965811 33971920 ECH