Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2869 ATGGAAGAGTTTCATGTACAGATTGGAAAAATGGAGGGAGAACAAAATTTTCTGGATTCACTGCTTCTTGTTCTCAGCTTCGAAGATCGAATTCACGGCTTGCGATGGTGTGACGATGAGCGACGAGAGGAATGGCGAGTGACGTTTGGTGTTGTAGCTTTAATTCGATGCTCTCGGACTTTGCTTGGATccatggaaacttgcagaaagTCCCCCTTAAAGCCTTGGAAGAAAGGGCCAACCAGAGGGAAGGGTGGTCCACAGAATGCTTCGTGCGAGTATCGAGGGGTTCGACAGAGAACGTGGGGCAAATGGGTGGCTGAGATCAGAGaaccgaagaagagaaccaGGCTCTGGCTTGGCTCTTTCGCTACTGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCCAGGAGACTCTATGGTCCAGATGCTTACCTTAATCTTCCACACCTTCAACCTACCTCCTCTTCTGCTATTACTTCTCAAAACTTCAAATGGTTGCCTTCCAAGAAATTCATTTCAATGTTTCCTTCTCGTGGACTACTCAATGTAACTGCACAGCCTAGTGTTAACTTAATCCATCAGAGGCTTGAACAACTTAAGCACAAGAAGGGTGTTCTAACTCAAGCCTCTTCTGCTTCATCCAGTCCTAAAGCAAAACTTAAGGTAATAGGCAGCAATAGCAATAATAATGCAGAAAGTCCTCCAAAGGAAGAAAAAGCTGAGAGATCATCAGAAAAGAAGGTTGAAGATGTTCAGGAGAAACCCCAGATTGACCTTAATGAGTTTCTTCAACAGCTGGGTGTTCTGACAGAAGAAAGACAGACTGAAAGATGTGATAGCTCAGGAAGTTCCACAGAGACTGAAGCTTTATCAGGAGATTACTATGATCAACTTGGAGTGTTTTGTGACCAAAGTGTTAACTGGGAGGAAATGATTGAAATGCATGGAATAGCTTCTAATCAGGGACTAGAAGCAACCCACTTCCCAGCATATGACATAAATGAAGAGCTTACTTTCTCCACTTCCATTTGGAACTTTTAA 1047 0.4241 MEEFHVQIGKMEGEQNFLDSLLLVLSFEDRIHGLRWCDDERREEWRVTFGVVALIRCSRTLLGSMETCRKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPTSSSAITSQNFKWLPSKKFISMFPSRGLLNVTAQPSVNLIHQRLEQLKHKKGVLTQASSASSSPKAKLKVIGSNSNNNAESPPKEEKAERSSEKKVEDVQEKPQIDLNEFLQQLGVLTEERQTERCDSSGSSTETEALSGDYYDQLGVFCDQSVNWEEMIEMHGIASNQGLEATHFPAYDINEELTFSTSIWNF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2869 348 MobiDBLite consensus disorder prediction 209 235 - -
Sto13g2869 348 MobiDBLite consensus disorder prediction 209 256 - -
Sto13g2869 348 Pfam AP2 domain 92 142 IPR001471 GO:0003700|GO:0006355
Sto13g2869 348 MobiDBLite consensus disorder prediction 236 256 - -
Sto13g2869 348 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
Sto13g2869 348 Gene3D AP2/ERF domain 93 151 IPR036955 GO:0003700|GO:0006355
Sto13g2869 348 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Sto13g2869 348 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 65 345 - -
Sto13g2869 348 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
Sto13g2869 348 CDD AP2 92 152 IPR001471 GO:0003700|GO:0006355
Sto13g2869 348 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Sto13g2869 348 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Sto13g2869 348 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 65 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2869 Sto-Chr13 33962330 33965636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2869 69 348 AP2-EREBP Transcription Factor Family AT3G57600 51.568 1.16e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g2869 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2869 - - gmx:100801311 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1289 8 8104067 8108708 Sto13g2869 13 33962330 33965636 CCT
Sto13g2869 13 33962330 33965636 Sto13g2869 13 33962330 33965636 ECH