Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2867 ATGAATCACTTGACTGTTGAGACAGAAGATTCTTTTGCAAGCTTGCTTGAGCTTGCAGCCAACAATGATGTTGAGCTATTCAAGAAATCAATTGAACGCGATCCTTCGTGTGTAGATGAGGTTGGACTATGGTACTGTCGACGGAAGGGATCAAACTCAAAGCAGATGGTGAATGAACACAGAACACCTTTGATGGTTGCTGCTACTTATGGCAGCATTGATGTCATCAAGTTGATTCTTTCACTATCTGCTGCAGATATCAACCGAGCTTGCGGCCTTCACAAAACTACTGCCCTTCATTGTGCAGCATCAGGTGGTTCTCTCAATGCTGTTCATGTTGTCAAGCTGCTTCTAGCAGCTGGCGCTGATCCTAATTCTGTGGATGCCGATGCTCATTCTCCATTTGATGTCATTGTTGTACCTCCCAAGCTTCAAAATGTCAAAACTTTGCTTGAACAACTTCTTCAAACTGATACTTCCATGGCAGGGTGTAATCTTAGGGTGATAACAGCCACATCAAGTATAAATTCTCCAGAGAATGATGACTCTGGTTTTTGTGCCTCTGAGAAGAAAGAATACCCTGTTGATCCATCTCTTCCTGACATCAAGAACAGCATATATTCAACCGATGAGTTTCGAATGTATTCTTTCAAGGTTCGACCTTGTTCGCGTGCTTATTCACATGATTGGACTGAATGCCCGTTTGTTCATCCCGGGGAGAATGCTCGAAGAAGGGATCCAAGAAAATTTCATTATAGCTGTGTCCCTTGTCCTGATTTCCGGAAAGGAGCTTGTCGTCGTGGAGATATGTGTGAATACGCTCATGGGGTTTTCGAGTGCTGGCTGCATCCAGCACAGTATCGAACCCGCCTGTGCAAGGATGGAATAAATTGCTCCAGAAGAGTTTGCTTCTTCGCCCACACAGCTGAGGAACTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTTCCCTCACCTCGCTCAACCACATCCTCTGCCATGGATTTTGCTGCAGCTATGAACCTATTGCCTGCCTCCCCTTCCTCAATATTCACTCCGCCAATGTCTCCATCTGCTAATGTCCCAACCTTGCATCTACCAGGAAGTAATCTTCATTCTAGTCGTTTGAGATCTTCATTGAATGCTAGGGATATTTTTGTGGAAGACTTTGATCTGTTGCCTGATTATGAGCTTAATGAGTTGTCTTGCCTTTCCCAGCAATCCATGAATTCTAATAATTTAAGTCACTCTGGTCGTATGATGACCTTGAACCCCTCAAATCTTGATGATCTCTTTTCTGCTGAGAGCTCATCCCCCCGGTTTTCTCCCACACATAAATCAGCCGTGTTTAATCAATTTCAGCAGCAAAGCTTGGTGTCTCCTGTGAATACAAATTTTTCTCCCAAGAATGTTGAGCAATCTTTATTACAGGCCTCGTTTGGGGTTCAGACATCAGGAAGGATGTCTCCCCGTAATGTGGAACCAATGAGCTCTAGGATTTCTATGCTGGCTCAACGTGAGAAGCAGCAACAGTTTCGTAGTCTTAGCTCCAGGGAACTTGGCGCCAACTCTGCTGCTGGTTTTTCTGACAATTGTTGGTCAAAATGGGGATCCTCCAATGGTGAATTGGATTGGGGTGTCAATACAGATGAATTGGGTAAGCTCCGTCGATCATCTTCATTTGAGTTTGGAAACAGTGGTGAGGAGCCTGATTTATCCTGGGTGCAATCACTTGTGAAAGAATCTCCAACTGAGATTAAAGACAAATTGGGAACGCCTGTCACAACTGCTGCAGCGGCTGGATATTCTGGAAACGCAACTTACAAGGGTCATTGGAGTGGAAGTTCCTTTGGACTCCAAATTGGTCCAGTTTTGGGGATGAAAATACAGGATGTTGCATCTGATATTTCTCTCGTAACTTGGAATCCGGAATTGTGGATGCCATGGAGTTGGTAA 1956 0.4448 MNHLTVETEDSFASLLELAANNDVELFKKSIERDPSCVDEVGLWYCRRKGSNSKQMVNEHRTPLMVAATYGSIDVIKLILSLSAADINRACGLHKTTALHCAASGGSLNAVHVVKLLLAAGADPNSVDADAHSPFDVIVVPPKLQNVKTLLEQLLQTDTSMAGCNLRVITATSSINSPENDDSGFCASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSTTSSAMDFAAAMNLLPASPSSIFTPPMSPSANVPTLHLPGSNLHSSRLRSSLNARDIFVEDFDLLPDYELNELSCLSQQSMNSNNLSHSGRMMTLNPSNLDDLFSAESSSPRFSPTHKSAVFNQFQQQSLVSPVNTNFSPKNVEQSLLQASFGVQTSGRMSPRNVEPMSSRISMLAQREKQQQFRSLSSRELGANSAAGFSDNCWSKWGSSNGELDWGVNTDELGKLRRSSSFEFGNSGEEPDLSWVQSLVKESPTEIKDKLGTPVTTAAAAGYSGNATYKGHWSGSSFGLQIGPVLGMKIQDVASDISLVTWNPELWMPWSW 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2867 651 SMART ANK_2a 94 126 IPR002110 GO:0005515
Sto13g2867 651 SMART ANK_2a 59 89 IPR002110 GO:0005515
Sto13g2867 651 ProSiteProfiles Ankyrin repeat profile. 59 84 IPR002110 GO:0005515
Sto13g2867 651 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 607 - -
Sto13g2867 651 Gene3D - 8 164 IPR036770 -
Sto13g2867 651 SMART c3hfinal6 251 277 IPR000571 GO:0046872
Sto13g2867 651 SMART c3hfinal6 286 309 IPR000571 GO:0046872
Sto13g2867 651 PRINTS Ankyrin repeat signature 60 75 IPR002110 GO:0005515
Sto13g2867 651 PRINTS Ankyrin repeat signature 113 127 IPR002110 GO:0005515
Sto13g2867 651 PANTHER UNKEMPT FAMILY MEMBER 1 607 IPR045234 -
Sto13g2867 651 SUPERFAMILY Ankyrin repeat 15 152 IPR036770 -
Sto13g2867 651 ProSiteProfiles Ankyrin repeat region circular profile. 59 84 - -
Sto13g2867 651 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 256 276 IPR000571 GO:0046872
Sto13g2867 651 Gene3D - 252 314 - -
Sto13g2867 651 ProSiteProfiles Ankyrin repeat profile. 94 129 IPR002110 GO:0005515
Sto13g2867 651 Pfam Ankyrin repeats (3 copies) 47 128 IPR002110 GO:0005515
Sto13g2867 651 ProSiteProfiles Zinc finger C3H1-type profile. 256 278 IPR000571 GO:0046872
Sto13g2867 651 ProSiteProfiles Ankyrin repeat region circular profile. 94 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2867 Sto-Chr13 33947060 33949215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2867 6 582 C2H2 Transcription Factor Family AT5G12850 52.255 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto13g2867 Ank_2 1e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2867 - - jre:109007212 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2867 13 33947060 33949215 Sto13g2867 13 33947060 33949215 ECH