Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2863 ATGGATAAGGAGAATCCAATGAACAACCTCGTGCGCCTCCTCATCTGTTCAGttcttcaatttatttatttatttatttatttttctaaggACACACCAGCAATTCAAGGGCGAAGCATGCAATCAAAATTGAATTACTCTGTACGCCATTGCCATTCAGAAGCAGATACAAGTTCTCAAGTTTGGTGGCATGACTCCTCTTCTAAGGATATGGAAATGGAAGGCAATCATGTGAATTCATTTATACCAAAATTTACGGATATCAATATTGATGGTAAAACAGATGAAGCACATCATGAGGCAACACAACTTTTGGCACAGCCATCATCACAGTTGGAGCTTGTTGGTCATTCAATGGCATGTGCCCCTTTCCTATATTATGTGACCCCTACTACTGATGGACCTCAGGCTTTGATGCATGCACATGGTGCAGAGGAGCCTGTTTATGTTAATGCGAAGCAATACCATGGAATTTTGAGGCGTAGGCAATCACGTGCCAAGGCCGGGCTGGAGAAGAAGCTCATCAAAGTGAGGAAGAATGAGGTTGAAATTTGTTTGCAAGAGTTGGCAGTGAAGTGGCAATCTCCCCCACCACGGCAGGTAACCCATGTGACAGCACTTTTGCTTGTGGGTTCGCAACTGAAAACTGCATTAACGGCCATTGCTATTGCTCTCAGAATCAGAATGAAACTTGCGCACAAGCGGAGAAGACTGAATATTTACCTTAAGATTCTCATAGCACTCATCGAGTCGCTTCAGGATCTGTTCTTCGGTTTCTGTCCCTCTGCTCAAAACATTGAGGTTCAGATCAAAATTGTTGGGAATCATAGGATAATAAGAAAGACATGA 849 0.4181 MDKENPMNNLVRLLICSVLQFIYLFIYFSKDTPAIQGRSMQSKLNYSVRHCHSEADTSSQVWWHDSSSKDMEMEGNHVNSFIPKFTDINIDGKTDEAHHEATQLLAQPSSQLELVGHSMACAPFLYYVTPTTDGPQALMHAHGAEEPVYVNAKQYHGILRRRQSRAKAGLEKKLIKVRKNEVEICLQELAVKWQSPPPRQVTHVTALLLVGSQLKTALTAIAIALRIRMKLAHKRRRLNIYLKILIALIESLQDLFFGFCPSAQNIEVQIKIVGNHRIIRKT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2863 282 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 146 180 IPR001289 GO:0003700|GO:0006355
Sto13g2863 282 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 47 179 IPR001289 GO:0003700|GO:0006355
Sto13g2863 282 SMART cbf3 143 203 IPR001289 GO:0003700|GO:0006355
Sto13g2863 282 Gene3D - 144 208 - -
Sto13g2863 282 ProSiteProfiles NF-YA/HAP2 family profile. 144 203 IPR001289 GO:0003700|GO:0006355
Sto13g2863 282 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 47 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2863 Sto-Chr13 33926068 33934146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2863 103 179 CCAAT-HAP2 Transcription Factor Family AT5G12840 46.000 1.22e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sto13g2863 CBFB_NFYA 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2863 K08064 - nnu:104597408 94.3597