Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2860 ATGGGTAATTGTTGCGTGACTCCTTTCAGCTCTCGCggcgagaagaagaaggggaataAGAAACAGAATCCATTCGCGATTGATTACGGCAACAAAGACGGAAATGGCGGAGGCAAAATCAACGTATTGAAGGAGCCGACGGGGCGCGAAATTGAGCAGAGATACGAGCTGGGTCGCGAGCTTGGAAGAGGAGAATTCGGAATTACCTACCTGTGCACGGATAAAGTGACGGGTGAGAATTATGCTTGCAAATCCATATCGAAGAAAAAGCTGAGAACGGCCGTTGATATCGATGACGTGAGGAGAGAAGTTGAGATCATGAAGCATTTGCCACAGCACCCAAATATCGTGAGCTTAAAGGACACTTATGAGGACGATAATGCGGTTCATCTTGTGATGGAATTGTGCGAGGGAGGAGAATTGTTCGATCGGATTGTTGCGCGTGGTCACTACACAGAACGCGCTGCTGCAGTTGTTACACGTACAGTTGTCGAAGTTGTGCAGATGTGCCACAAACATGGTGTGATGCATCGGGATCTTAAACCTGAGAACTTTTTGTTTGCAAACAAGAAGGAAACAGCGCCGCTGAAGGCTATTGATTTTGGATTGTCAGTGTTCTTTAAACCTGGTGAAAAATTTAATGAGATCGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAAGCGAAACTATGGACCAGAGGTAGATATCTGGAGCACAGGAGTAATTCTTTACATCTTACTTTGTGGTGTCCCACCATTTTGGGCAGAAACTGAACAGGGAGTTGCACAAGCAATTATACGATCTGTCGTTGATTTTAAAAGGGATCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTAACCCTGACCCAAAGCAGCGTCTTACTGCTCAGGAAGTATTAGATCATCCATGGTTACAAAATGCACAAAAGGCTCCTAATGTTTCATTGGGAGAAACTGTTAGGGCAAGGCTCAAGCAATTCTCTGTCATGAACAAGCTTAAGAAAAGAGCTCTGAGGGTAATTGCAGAGCATTTGTCAGTAGAAGAAGTTGCTGGAGTAAAAGAGAGATTCCTGATGATGGATACAGGAAGCAGAGGCAAGATTAACATTGATGAGCTACGAGTAGGGTTGCATAAATTAGGTCATCCTGTTCCTGATGCTGATCTCCAAATTTTGATGGAAGCCGGTGACGTAGATAGGGATGGATATCTGGATTATGGAGAATTTGTGGCCATTTCAGTTCATCTGAAAAAGATGGCCAATGATGAACACCTTCACAAAGCTTTTCAATTTTTTGATCAGAACAAAAGTGGGTATATAGAAATTGAGGAGCTACGTGATGCCTTAGCTGATGAAATTGGTACAAACAGTGAAGAAGTCATTAATGCAATTATTCATGACGTGGACACAGATAAGGATGGGAAAATAAGCTATGAGGAGTTTGATGCAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAAGCATATGCTTCTTTTATTTATTGAGGGTGGTGTGGAGGAAGGCGTAAATGGGAGGATTGGACTAGTGAAGATAGATGCACATGCACTTGCTGAGCTGCCTCCATTGATGATGGCACTTTGTTTGCTGAGCCCCTTACTGGAATCAGTTTATAAACTGTTGCCTGAGGAGTGGGGAGAATGa 1692 0.4279 MGNCCVTPFSSRGEKKKGNKKQNPFAIDYGNKDGNGGGKINVLKEPTGREIEQRYELGRELGRGEFGITYLCTDKVTGENYACKSISKKKLRTAVDIDDVRREVEIMKHLPQHPNIVSLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAVVTRTVVEVVQMCHKHGVMHRDLKPENFLFANKKETAPLKAIDFGLSVFFKPGEKFNEIVGSPYYMAPEVLKRNYGPEVDIWSTGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLNPDPKQRLTAQEVLDHPWLQNAQKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLSVEEVAGVKERFLMMDTGSRGKINIDELRVGLHKLGHPVPDADLQILMEAGDVDRDGYLDYGEFVAISVHLKKMANDEHLHKAFQFFDQNKSGYIEIEELRDALADEIGTNSEEVINAIIHDVDTDKDGKISYEEFDAMMKAGTDWRKASKHMLLLFIEGGVEEGVNGRIGLVKIDAHALAELPPLMMALCLLSPLLESVYKLLPEEWGE 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2860 563 PANTHER SERINE/THREONINE-PROTEIN KINASE 11 510 - -
Sto13g2860 563 CDD STKc_CAMK 54 312 - -
Sto13g2860 563 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Sto13g2860 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Sto13g2860 563 MobiDBLite consensus disorder prediction 9 32 - -
Sto13g2860 563 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g2860 563 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Sto13g2860 563 SUPERFAMILY EF-hand 337 502 IPR011992 -
Sto13g2860 563 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g2860 563 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Sto13g2860 563 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Sto13g2860 563 Pfam EF-hand domain pair 431 494 IPR002048 GO:0005509
Sto13g2860 563 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g2860 563 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Sto13g2860 563 SMART efh_1 360 388 IPR002048 GO:0005509
Sto13g2860 563 SMART efh_1 468 496 IPR002048 GO:0005509
Sto13g2860 563 SMART efh_1 396 424 IPR002048 GO:0005509
Sto13g2860 563 SMART efh_1 432 460 IPR002048 GO:0005509
Sto13g2860 563 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Sto13g2860 563 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 11 510 - -
Sto13g2860 563 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Sto13g2860 563 Gene3D - 322 497 - -
Sto13g2860 563 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Sto13g2860 563 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Sto13g2860 563 Pfam EF-hand domain pair 373 422 IPR002048 GO:0005509
Sto13g2860 563 SUPERFAMILY Protein kinase-like (PK-like) 53 322 IPR011009 -
Sto13g2860 563 CDD EFh 432 494 IPR002048 GO:0005509
Sto13g2860 563 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2860 Sto-Chr13 33902823 33907451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2860 1 505 EF-hand Containing Proteins AT5G19450 79.528 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sto13g2860 Pkinase 1.3e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2860 K13412 - tcc:18598981 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1299 8 8207794 8212052 Sto13g2860 13 33902823 33907451 CCT
Sto13g2860 13 33902823 33907451 Sto13g2860 13 33902823 33907451 ECH